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PDBsum entry 2yd2

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Tunnel analysis for: 2yd2 calculated with MOLE 2.0 PDB id
2yd2
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.94 10.1 -0.63 0.15 15.3 67 1 1 1 1 1 1 0  
2 2.88 10.3 -1.34 -0.27 14.7 81 2 1 1 2 2 0 0  
3 2.04 11.1 1.40 0.29 3.8 76 0 1 0 2 1 1 0  
4 1.73 14.4 0.86 0.34 10.2 79 1 2 0 6 2 0 0  
5 2.02 7.5 -0.05 -0.46 7.2 99 1 0 1 1 0 0 0  
6 2.02 9.2 -0.07 -0.47 7.2 88 1 0 1 2 0 0 0  
7 2.13 10.9 -1.20 -0.41 17.6 79 3 0 1 0 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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