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Ligand clusters for UniProt code P00157

Ligand clusters for P00157: Cytochrome b OS=Bos taurus GN=MT-CYB PE=1 SV=1

Top 6 (of 8) ligand clusters
Cluster 1.
16 ligand types
51 ligands
Cluster 2.
9 ligand types
12 ligands
Cluster 3.
3 ligand types
20 ligands
Cluster 4.
2 ligand types
23 ligands
Cluster 5.
1 ligand type
3 ligands
Cluster 6.
1 ligand type
1 ligand
Representative protein: 1be3C  
 

Structures

PDB   Schematic diagram
1be3C    
1sqqC    
1sqpC    
4d6uC    
1ppjC    
 more ...

 

 Cluster 1 contains 16 ligand types

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Ligand Description


 
1. Ligand: UQ2 × 4
Ubiquinone-2
PDB codes: 1ntz(C), 1sqq(C), 1sqv(C), 1sqx(C).


 
2. Ligand: QNO × 1
2-Nonyl-4-Hydroxyquinoline n-Oxide
PDB code: 1nu1(C).


 
3. Ligand: HEM × 14
Protoporphyrin IX containing fe
PDB codes: 1bgy(C), 1l0l(C), 1l0n(C), 1ntk(C), 1ntm(C), 1ntz(C), 1nu1(C), 1qcr(C), 1sqb(C), 1sqp(C), 1sqq(C), 1sqv(C), 1sqx(C), 2fyu(C).


 
4. Ligand: AY1 × 1
Antimycin a1
PDB code: 1ntk(C).


 
5. Ligand: PEE × 6
1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine
PDB codes: 1pp9(C), 1ppj(C), 1sqp(C), 2a06(C).


 
6. Ligand: PLX × 1
(9r,11s)-9-({[(1s)-1-Hydroxyhexadecyl]oxy}methyl)-2,2- Dimethyl-5,7,10-Trioxa-2lambda~5~-Aza-
6lambda~5~- Phosphaoctacosane-6,6,11-Triol
PDB code: 1sqp(C).


 
7. Ligand: CDL × 1
Cardiolipin
PDB code: 1sqp(C).


 
8. Ligand: HEM × 7
Protoporphyrin IX containing fe
PDB codes: 1be3(C), 1pp9(C), 1ppj(C), 2a06(C), 2ybb(C), 4d6t(C), 4d6u(C).


 
9. Ligand: PEE × 2
1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine
PDB codes: 4d6t(C), 4d6u(C).


 
10. Ligand: PO4 × 7
Phosphate ion
PDB codes: 1ppj(C), 2a06(C), 4d6t(C), 4d6u(C),


 
11. Ligand: _UQ × 2
Coenzyme q10, (2z,6e,10z,14e,18e,22e,26z)-Isomer
PDB codes: 1pp9(C), 2a06(C).


 
12. Ligand: 4X9 × 1
3-Chloro-2,6-Dimethyl-5-{4-[4-(Trifluoromethoxy) phenoxy]phenyl}pyridin-4-Ol
PDB code: 4d6t(C).


 
13. Ligand: ANY × 1
2-Methyl-Butyric acid 3-(3-Formylamino-2-Hydroxy- Benzoylamino)-8-Heptyl-2,6-Dimethyl-4,9-Dioxo-
[1, 5]dioxonan-7-Yl ester
PDB code: 1ppj(C).


 
14. Ligand: G8U × 1
3-Chloro-6-(Hydroxymethyl)-2-Methyl-5-{4-[3- (Trifluoromethoxy)phenoxy]phenyl}pyridin-4- Ol
PDB code: 4d6u(C).


 
15. Ligand: GOL × 1
Glycerol
PDB code: 2a06(C).


 
16. Ligand: UQ1 × 1
Ubiquinone-1
PDB code: 2ybb(C).

 

 Cluster 2 contains 9 ligand types

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Ligand Description


 
1. Ligand: UQ2 × 1
Ubiquinone-2
PDB code: 1ntz(C).


 
2. Ligand: SMA × 1
Stigmatellin a
PDB code: 1sqx(C).


 
3. Ligand: UHD × 1
6-Hydroxy-5-Undecyl-1,3-Benzothiazole-4,7-Dione
PDB code: 1sqv(C).


 
4. Ligand: OST × 1
Methyl (2z)-3-Methoxy-2-{2-[(E)-2- Phenylvinyl]phenyl}acrylate
PDB code: 1sqq(C).


 
5. Ligand: FMX × 1
Famoxadone
PDB code: 1l0l(C).


 
6. Ligand: FDN × 1
(5s)-3-Anilino-5-(2,4-Difluorophenyl)-5-Methyl-1,3- Oxazolidine-2,4-Dione
PDB code: 2fyu(C).


 
7. Ligand: AZO × 1
Methyl (2z)-2-(2-{[6-(2-Cyanophenoxy)pyrimidin-4- Yl]oxy}phenyl)-3-Methoxyacrylate
PDB code: 1sqb(C).


 
8. Ligand: MYX × 1
(2z,6e)-7-{2'-[(2e,4e)-1,6-Dimethylhepta-2,4-Dienyl]-2, 4'-Bi-1,3-Thiazol-4-Yl}-3,5-Dimethoxy-4-
Methylhepta-2, 6-Dienamide
PDB code: 1sqp(C).


 
9. Ligand: SMA × 4
Stigmatellin a
PDB codes: 1pp9(C), 1ppj(C), 2a06(C), 2ybb(C).

 

 Cluster 3 contains 3 ligand types

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Ligand Description


 
1. Ligand: PEE × 4
1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine
PDB codes: 1pp9(C), 1ppj(C), 1sqp(C), 2a06(C).


 
2. Ligand: CDL × 14
Cardiolipin
PDB codes: 1pp9(C), 1ppj(C), 1sqp(C), 2a06(C), 2ybb(C), 4d6t(C), 4d6u(C),


 
3. Ligand: PEE × 2
1,2-Dioleoyl-Sn-Glycero-3-Phosphoethanolamine
PDB codes: 4d6t(C), 4d6u(C).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: HEM × 20
Protoporphyrin IX containing fe
PDB codes: 1bgy(C), 1l0l(C), 1l0n(C), 1ntk(C), 1ntm(C), 1ntz(C), 1nu1(C), 1sqb(C), 1sqp(C), 1sqq(C), 1sqv(C), 1sqx(C), 2fyu(C), 1be3(C), 1pp9(C), 1ppj(C), 2a06(C), 2ybb(C), 4d6t(C), 4d6u(C).


 
2. Ligand: GOL × 3
Glycerol
PDB codes: 1pp9(C), 1ppj(C), 2a06(C).

 

 Cluster 5 contains 1 ligand type

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Ligand Description


 
1. Ligand: BHG × 3
2-Hexyloxy-6-Hydroxymethyl-Tetrahydro-Pyran-3,4,5-Triol
PDB codes: 1pp9(C), 1ppj(C), 2a06(C).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: BHG × 1
2-Hexyloxy-6-Hydroxymethyl-Tetrahydro-Pyran-3,4,5-Triol
PDB code: 1ppj(C).

 

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