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PDBsum entry 2ya8

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2ya8 calculated with MOLE 2.0 PDB id
2ya8
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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11 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.26 26.0 -0.31 -0.45 5.3 93 0 1 3 3 0 1 0  1781 EDO A
2 1.29 30.7 -0.24 -0.32 8.8 95 2 1 3 4 0 0 0  1781 EDO A
3 1.30 26.7 -0.42 -0.39 6.6 91 3 1 3 3 0 1 0  1781 FMT B
4 2.86 5.5 0.39 -0.14 2.3 72 0 0 0 1 1 1 0  
5 2.35 7.7 -0.15 -0.22 2.5 70 0 0 0 2 2 0 0  
6 2.33 3.2 -2.23 -0.90 29.4 82 1 2 0 0 0 0 0  
7 1.71 6.2 -1.18 -0.50 11.2 85 0 2 2 2 0 0 0  
8 1.72 16.5 -2.06 -0.67 23.2 84 1 3 2 2 0 0 0  
9 1.90 4.5 -1.67 -0.40 22.6 90 2 0 1 1 0 0 0  
10 1.79 4.0 -1.61 -0.27 23.1 90 2 0 2 1 0 0 0  
11 1.45 6.9 -0.59 -0.04 23.0 88 2 1 0 2 0 0 0  
12 1.46 5.6 -1.90 -0.71 15.1 100 2 0 3 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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