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PDBsum entry 2ya7

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2ya7 calculated with MOLE 2.0 PDB id
2ya7
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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18 tunnels, coloured by tunnel radius 20 tunnels, coloured by tunnel radius 20 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.34 43.9 -1.07 -0.58 12.8 89 1 4 3 4 0 2 0  
2 1.32 45.7 -1.26 -0.53 14.0 89 2 4 4 4 0 1 0  
3 1.34 54.5 -1.45 -0.58 13.1 84 6 3 6 4 1 1 0  
4 1.37 55.6 -1.52 -0.61 18.0 83 5 5 3 3 0 2 0  
5 1.32 58.0 -1.59 -0.63 15.1 86 5 4 6 3 1 1 0  
6 1.59 16.6 0.10 0.37 17.6 77 2 4 0 3 4 0 0  1776 ZMR A
7 1.30 31.3 -0.43 -0.44 7.2 94 3 1 3 4 0 0 0  
8 2.16 3.6 -0.48 0.37 8.0 70 1 0 0 1 1 0 0  
9 1.76 5.5 0.26 -0.08 12.1 94 1 0 0 2 0 1 0  
10 1.41 12.1 -0.32 -0.02 17.4 81 2 1 0 2 1 0 0  
11 1.81 4.2 -1.65 -0.34 24.6 85 2 0 0 1 0 0 0  
12 2.68 4.0 -0.59 -0.60 5.5 84 1 0 0 0 1 0 0  
13 1.79 11.1 0.59 0.51 14.5 77 1 3 0 3 4 0 0  1776 ZMR D
14 1.81 4.7 -1.69 -0.32 25.2 85 2 0 0 1 0 0 0  
15 1.58 13.2 -1.19 0.07 29.9 86 3 3 0 3 1 0 0  1776 ZMR D
16 1.55 6.6 -0.48 -0.06 21.9 88 2 1 0 2 0 0 0  
17 1.64 11.7 -0.65 -0.20 6.8 75 2 0 1 1 1 1 0  
18 1.34 14.0 -0.57 -0.11 9.3 75 3 0 1 1 1 1 0  1777 CL B
19 1.68 2.9 -2.35 -0.75 15.3 102 1 0 3 0 0 1 0  
20 1.33 10.0 -1.03 -0.42 11.0 83 2 0 2 0 1 1 0  1777 CL D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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