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PDBsum entry 2ya4

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Cleft analysis for: 2ya4 PDB id
2ya4
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 15292.97 2.34 70.28 2 13.95 1 19.69 1 43 40 30 42 31 28 0 FMT 1784[A], FMT 1783[B] (4 atoms)
2 6525.56 0.00 67.04 4 10.24 3 11.38 2 29 16 38 20 13 10 0 FMT 1785[A], FMT 1778[B], FMT 
1779[B], EDO 1780[B], EDO 1781[B]
(17 atoms)
3 2576.39 0.00 68.09 3 8.63 6 10.41 3 11 9 15 15 2 7 0 FMT 1783[A] (3 atoms)
4 1871.86 0.00 66.65 5 8.97 5 8.24 9 11 6 8 11 0 6 0 FMT 1783[B] (2 atoms)
5 1057.22 0.00 74.56 1 9.87 4 9.00 5 5 5 5 6 8 0 0 FMT 1777[A], FMT 1778[A], EDO 
1779[A], EDO 1780[A] (14 atoms)
6 901.12 0.00 62.02 6 8.17 8 9.39 4 5 2 4 3 0 0 0  
7 936.56 0.00 59.86 8 12.13 2 8.51 8 4 4 4 1 2 3 0  
8 1123.88 0.00 59.12 9 8.33 7 7.83 10 5 5 4 6 2 3 0 EDO 1781[A] (2 atoms)
9 1094.77 0.00 61.32 7 7.84 10 8.77 6 5 4 5 8 2 3 0 EDO 1782[B] (4 atoms)
10 1021.78 0.00 52.76 10 7.87 9 8.54 7 6 3 4 2 1 2 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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