PDBsum entry 2y9z Go to PDB code:  Pore analysis for: 2y9z calculated with MOLE 2.0 PDB id 2y9z Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 1.41 46.9 -1.86 -0.58 16.3 81 9 0 3 0 2 0 0  DA 17 C DG 21 C DC 22 C DC 23 C DT 24 D DT 29 D DT 30 D 2 1.37 1.37 47.0 -1.86 -0.61 23.7 72 1 2 0 1 2 0 0  DG 26 E DG 27 E DC 28 E DG 21 F DC 22 F DC 23 F DT 24 F 3 1.42 1.42 61.3 -1.33 -0.31 19.7 77 7 3 1 1 2 0 0  DG 27 D DC 28 D DT 29 D DT 30 D 4 1.32 1.54 78.3 -1.89 -0.60 22.3 85 7 4 4 1 3 0 0  DA 17 C DT 29 D DT 30 D DA 25 E DG 26 E 5 1.25 3.98 80.2 -1.37 -0.20 24.7 85 6 6 1 8 1 0 0  DG 21 C DC 22 C DT 24 C DG 21 D DC 22 D DC 23 D DT 24 D 6 1.46 1.56 87.2 -1.55 -0.34 19.9 81 12 5 1 7 4 0 0  DA 17 C DG 21 C DC 22 C DC 23 C DT 24 C DT 29 D DT 30 D 7 1.92 1.98 94.3 -1.39 -0.47 17.5 86 7 7 6 5 1 3 0  DG 21 C DC 22 C DC 23 C DT 24 C DT 24 D 8 1.42 1.44 95.2 -1.05 -0.46 17.2 83 11 7 4 4 3 1 0  DC 22 C DC 23 C DT 24 C DA 25 C DT 24 D DG 27 D DC 28 D 9 1.48 1.56 107.8 -1.40 -0.40 23.2 82 7 9 2 8 1 2 0  DT 24 C DA 25 C 10 1.42 1.47 111.6 -1.20 -0.41 21.5 82 12 11 2 8 3 0 0  DT 24 C DA 25 C DG 27 D DC 28 D 11 1.56 1.69 111.3 -1.35 -0.39 19.3 84 9 8 6 3 2 2 0  DA 17 C DA 25 C DC 28 D DT 29 D DT 30 D 12 1.91 2.56 117.5 -1.67 -0.69 19.5 85 5 5 4 1 1 1 0  DT 14 C DG 21 C DC 22 C DC 23 C DT 24 D DA 31 D DT 32 D DA 25 E DG 26 E 13 1.44 1.44 123.7 -1.26 -0.46 19.8 84 10 10 7 4 2 2 0  DA 25 C DG 27 D DC 28 D 14 1.54 1.54 163.1 -1.51 -0.56 17.5 84 12 9 5 6 3 1 0  DT 14 C DG 21 C DC 22 C DC 23 C DT 24 C DT 30 D D A 31 D DT 32 D DA 25 E DG 26 E 15 1.60 1.78 211.2 -1.21 -0.34 18.8 77 12 7 5 11 2 7 0  DC 22 C DT 30 C DA 31 C DT 32 C DT 14 D DA 20 D DG 21 D DC 22 D DC 23 D DT 24 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.