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PDBsum entry 2xyd

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Ligand/metal interactions PDB id
2xyd
Ligand highlighted
NAG-NAG-BMA-FUC
Ligands
3ES ×2
3ES 1611(A)
NAG-FUC ×2
NAG 1612(A) to FUC 1613(A)
NAG-NAG ×2
NAG 1614(A) to NAG 1615(A)
NAG-NAG-BMA-FUC
NAG 1616(A) to FUC 1619(A)
PEG ×4
PEG 1622(A)
PEG 1623(A)
PEG 1624(A)
PG4 ×2
PG4 1625(A)
PG4 1621(B)
NAG-NAG-BMA
NAG 1616(B) to BMA 1618(B)
P6G
P6G 1622(B)
Metals
_ZN ×2
ZN 1620(A)
_CL ×2
CL 1621(A)
  
Ligand NAG-NAG-BMA-FUC

NAG - N-Acetyl-D-Glucosamine Formula: C8H15NO6
FUC - Alpha-L-Fucose Formula: C6H12O5
BMA - Beta-D-Mannose Formula: C6H12O6
Validation of ligand annotation
Per Residue Validation
Atoms Missing Incorrect Chiral Centres
Residue Dic. Struc. Link Subs. Atoms Rings Planar High C Other
NAG 1616(A) 15 15 1 1 Complete Chiral checks - OK
NAG 1617(A) 15 15 1 0 Complete Chiral checks - OK
BMA 1618(A) 12 12 1 0 Complete Chiral checks - OK
FUC 1619(A) 11 11 1 0 Complete Chiral checks - OK
Additional Information

Jmol
 

LIGPLOT of interactions involving ligand


Jmol


 

NAG 1616(A) to FUC 1619(A)

  
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