PDBsum entry 2xvq

Pore analysis for: 2xvq calculated with

MOLE 2.0

PDB id

2xvq

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

1.38

46.4

-0.82

0.20

21.7

75

8

4

1

9

4

1

0

2

1.13

2.00

48.0

-0.27

0.05

13.9

78

4

2

3

5

1

1

1

3

1.98

3.09

26.6

1.36

0.44

5.5

71

3

0

0

4

4

0

0

4

1.64

2.72

29.3

-0.71

0.18

22.0

76

4

2

1

7

1

0

1

5

1.34

1.94

30.3

-0.05

0.30

12.4

63

4

2

0

4

6

2

0

6

2.09

2.41

31.4

-1.58

-0.23

23.3

72

6

2

1

3

3

2

0

7

2.07

2.41

31.6

-1.29

-0.05

22.7

72

7

2

0

4

3

2

0

8

1.34

1.69

37.3

0.53

0.29

11.3

80

5

2

2

9

2

0

0

9

1.24

1.68

44.1

0.35

0.17

11.2

78

4

3

1

11

4

0

0

10

1.33

2.00

44.6

-0.48

0.28

16.6

72

6

2

2

5

5

1

0

11

1.34

1.94

63.6

-0.94

-0.02

23.8

73

6

6

2

4

5

0

0

12

1.37

2.04

100.6

-1.98

-0.40

24.1

78

6

9

6

2

4

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.