PDBsum entry 2xn4

Pore analysis for: 2xn4 calculated with

MOLE 2.0

PDB id

2xn4

Pores calculated on whole structure

Pores calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

1 pore, coloured by radius

6 pores, coloured by radius

6 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.20

2.20

25.5

-2.10

-0.55

15.2

80

3

2

5

0

1

2

1

EDO 904 B

2

1.45

1.62

27.8

-2.32

-0.63

21.6

76

5

2

3

0

1

2

1

3

1.47

1.64

31.9

-1.99

-0.49

20.1

73

4

1

3

0

2

2

1

4

1.50

1.64

32.6

-2.12

-0.60

20.0

74

5

2

3

0

2

2

1

5

1.45

1.62

38.2

-2.19

-0.58

23.2

76

6

2

3

0

2

2

1

6

1.46

1.61

39.0

-2.28

-0.58

21.0

79

6

2

5

0

2

2

1

EDO 904 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.