PDBsum entry 2xb7

Tunnel analysis for: 2xb7 calculated with

MOLE 2.0

PDB id

2xb7

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

5 tunnels, coloured by tunnel radius

5 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.21

1.32

18.7

0.51

0.06

11.4

82

1

4

0

7

2

1

0

2

1.29

1.29

19.2

1.47

0.56

8.8

78

1

3

2

6

2

0

0

3

1.13

1.43

15.9

-0.38

-0.09

8.1

70

2

1

3

4

2

1

1

4

1.13

1.42

16.4

-0.25

-0.13

7.0

73

2

0

4

4

2

2

1

5

1.22

1.45

19.3

0.46

0.36

19.0

73

4

2

0

6

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.