PDBsum entry 2xaj Go to PDB code:  Tunnel analysis for: 2xaj calculated with MOLE 2.0 PDB id 2xaj Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.03 2.16 27.6 -0.03 0.25 9.6 78 2 1 4 5 4 0 0  FAD 900 A TCA 901 A 2 1.74 1.74 28.2 -0.12 0.14 11.2 80 2 3 1 4 3 0 0  FAD 900 A TCA 901 A 3 1.79 1.92 42.8 -0.70 -0.08 11.1 75 4 2 1 7 3 1 0  FAD 900 A 4 1.83 2.80 15.7 -2.17 -0.49 22.7 74 4 1 1 2 1 1 0   5 1.56 1.86 19.6 0.85 0.14 1.6 74 0 0 2 5 1 1 0   6 1.34 1.34 19.5 -1.16 -0.68 18.8 92 1 3 1 4 0 0 0   7 1.35 1.44 15.6 1.41 0.63 10.4 89 1 1 0 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.