PDBsum entry 2xae

Tunnel analysis for: 2xae calculated with

MOLE 2.0

PDB id

2xae

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.18

1.28

22.1

1.14

0.35

12.8

81

1

2

1

7

1

0

0

2XA 1365 B

2

1.32

1.96

27.1

2.68

0.82

5.4

78

2

1

0

11

2

0

0

2XA 1365 B

3

1.35

2.29

27.3

2.77

0.86

5.0

78

2

1

0

11

2

0

0

2XA 1365 B

4

1.22

2.32

26.2

1.94

0.55

8.2

77

2

1

0

10

2

0

0

2XA 1364 C

5

1.18

2.72

29.5

2.24

0.69

7.6

78

2

1

0

11

2

0

0

2XA 1364 C

6

1.24

2.64

43.0

0.60

0.29

11.6

75

5

2

1

11

4

1

0

2XA 1364 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.