PDBsum entry 2xac

Tunnel analysis for: 2xac calculated with

MOLE 2.0

PDB id

2xac

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.30

2.07

17.6

-0.50

-0.27

7.2

80

0

2

2

2

1

1

1

2

1.33

1.33

22.7

-1.50

-0.36

16.8

67

2

2

0

1

1

2

1

3

1.33

1.33

22.9

-0.75

-0.28

4.5

65

1

0

2

0

1

3

2

4

1.33

1.33

23.3

-0.94

-0.33

8.8

68

1

2

1

0

1

2

2

5

1.54

1.84

17.9

-1.17

-0.34

12.8

79

1

1

2

4

1

1

0

6

1.30

1.59

19.0

-1.45

-0.65

16.7

75

1

2

1

0

0

1

1

7

1.32

1.48

26.0

-0.58

-0.36

4.7

77

1

1

2

1

1

2

1

8

1.28

1.60

26.5

-0.51

-0.12

8.0

73

0

2

1

3

1

2

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.