spacer
spacer

PDBsum entry 2x8y

Go to PDB code: 
Top Page protein ligands metals tunnels links
Tunnel analysis for: 2x8y calculated with MOLE 2.0 PDB id
2x8y
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
12 tunnels, coloured by tunnel radius 14 tunnels, coloured by tunnel radius 14 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.45 42.3 -1.05 -0.03 19.6 73 4 4 1 5 7 0 0  
2 1.45 46.8 -1.28 -0.25 22.7 76 5 5 0 6 5 1 0  
3 1.43 56.3 -1.99 -0.35 26.9 84 7 7 6 4 4 0 0  1615 FLC A
4 1.47 63.5 -1.44 -0.23 23.0 77 7 7 4 6 5 0 1  1615 FLC A
5 1.26 64.5 -2.09 -0.39 28.6 82 7 10 7 4 5 0 0  1615 FLC A
6 2.25 6.1 -1.83 -0.41 22.6 69 1 2 1 2 0 1 0  
7 1.60 9.1 -1.21 -0.60 12.9 87 1 1 2 1 0 1 0  
8 1.34 10.7 -1.72 -0.29 22.6 74 2 1 0 1 1 0 0  
9 1.28 13.2 -1.78 -0.40 23.2 74 2 2 0 1 1 0 0  
10 1.34 13.5 -1.00 -0.24 17.2 82 1 2 0 3 1 0 0  
11 1.77 5.0 -1.00 -0.38 16.8 94 1 0 1 2 0 0 0  
12 1.92 9.1 -1.02 -0.41 21.3 89 1 1 0 3 0 0 0  
13 1.32 9.8 -1.80 -0.63 13.7 78 2 1 1 0 0 1 0  
14 1.80 10.3 0.01 0.61 23.8 84 3 1 0 3 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer