spacer
spacer

PDBsum entry 2wbj

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 2wbj calculated with MOLE 2.0 PDB id
2wbj
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.52 3.81 27.4 -2.14 -0.61 16.9 87 4 1 3 1 0 1 0  
2 2.90 4.50 46.9 -0.89 -0.05 24.0 85 8 2 1 5 0 0 0  
3 2.69 2.91 51.0 -2.28 -0.53 26.2 90 6 2 6 3 1 0 0  
4 1.16 1.38 68.3 -1.14 -0.53 12.1 90 2 5 9 6 0 3 0  SO4 1201 C
5 2.69 3.45 72.7 -1.50 -0.30 21.8 84 12 2 4 5 0 1 0  
6 2.37 2.66 76.0 -1.55 -0.44 15.8 83 6 5 7 2 3 1 0  
7 1.89 3.39 80.9 -1.39 -0.64 13.5 93 2 3 6 4 0 1 0  
8 2.02 2.17 83.1 -2.14 -0.56 18.7 83 4 4 7 2 2 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer