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PDBsum entry 2w7o

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2w7o calculated with MOLE 2.0 PDB id
2w7o
Pores calculated on whole structure Pores calculated excluding ligands

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16 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.54 1.67 27.3 -1.50 -0.57 15.7 84 4 1 3 2 0 0 0  DG 9 E DA 10 E DT 13 F DC 14 F
2 2.36 2.46 28.4 -0.89 -0.15 20.5 86 3 2 2 2 1 0 0  DT 12 P DC 2 T DA 3 T DC 4 T 8OG 5 T DG 6 T
3 2.28 2.38 29.9 -1.89 -0.33 29.7 81 6 2 2 2 1 0 0  DG 8 P DG 9 P DA 10 P DT 11 P DT 12 P 8OG 5 T DC
14 T DC 15 T
4 1.22 1.47 33.2 0.51 0.00 8.7 86 2 0 1 8 1 0 0  
5 2.39 2.56 34.3 -2.19 -0.46 31.6 83 3 4 2 3 1 1 0  DT 12 E DC 4 F 8OG 5 F DG 6 F
6 2.17 2.17 34.9 -1.31 -0.47 18.3 86 5 1 2 2 0 0 0  DG 8 P DG 9 P DA 10 P DT 11 P DT 12 P DC 2 T DA 3
T DC 4 T 8OG 5 T DG 6 T DA 7 T
7 1.35 1.62 35.4 -0.20 -0.37 4.7 88 1 1 2 2 2 0 0  DT 12 E DA 8 F DT 9 F DC 10 F DC 11 F DT 12 F DT
13 F
8 1.97 2.36 38.2 -0.86 -0.27 16.5 80 6 4 1 2 2 0 0  DGT 1520 B DC 13 E DG 6 F DA 7 F DA 8 F
9 1.65 1.65 43.3 -1.87 -0.39 31.1 82 7 3 2 2 1 0 0  DG 5 E DG 8 E DG 9 E DA 10 E DT 11 E DT 12 E 8OG
5 F DG 6 F DA 7 F DA 8 F DC 10 F DC 11 F
10 1.65 1.65 46.0 -1.16 -0.37 20.8 92 4 1 4 2 0 1 0  DG 5 E DG 8 E DG 9 E DA 10 E DC 4 F 8OG 5 F DG 6
F DA 7 F DA 8 F DC 10 F DC 11 F
11 1.50 1.66 47.9 -1.84 -0.52 19.1 91 4 0 5 1 0 0 0  DG 5 E DG 8 E DG 9 E DA 10 E DC 10 F DC 11 F DT
13 F DC 14 F
12 2.00 2.00 56.3 -1.03 -0.62 12.0 87 4 2 2 2 1 0 0  DG 8 P DG 9 P DA 10 P DT 11 P DA 8 T DT 9 T DC 10
T DC 11 T DT 12 T DT 13 T DC 14 T DC 15 T
13 1.35 1.41 57.8 -1.08 -0.50 13.2 81 3 2 4 3 1 0 0  DA 7 E DG 8 E DT 13 F DC 14 F DC 15 F DC 16 F
14 1.35 1.41 67.9 -0.55 -0.32 14.9 81 6 3 1 6 1 0 0  DA 7 E DG 8 E DG 9 E DA 10 E DT 13 F DC 14 F DC
15 F DC 16 F
15 2.27 2.33 76.7 -1.31 -0.46 17.2 90 8 2 6 4 0 0 0  DA 8 T DT 9 T DC 10 T DC 11 T
16 2.32 2.44 78.6 -1.79 -0.36 27.6 79 8 7 3 2 2 1 0  DT 12 P DC 4 T 8OG 5 T DG 6 T DA 7 T
17 1.46 1.68 80.7 -1.07 -0.39 11.8 90 4 1 8 2 2 1 0  DC 10 F DC 11 F DT 12 F DT 13 F
18 1.35 1.42 85.3 -0.30 -0.46 9.7 84 3 3 0 5 1 0 0  DA 7 E DG 8 E DG 9 E DA 10 E DT 11 E DT 12 E DA 8
F DT 9 F DC 10 F DC 11 F DT 12 F DT 13 F DC 14 F
DC 15 F DC 16 F
19 2.95 2.95 84.4 -1.25 -0.46 13.5 91 5 2 8 2 1 1 0  DT 12 E DA 8 F DT 9 F DC 10 F DC 11 F
20 1.39 1.44 86.0 -0.71 -0.35 15.7 86 5 3 4 5 1 0 0  DG 5 E DA 7 E DG 8 E DG 9 E DA 10 E DC 10 F DC 11
F DC 14 F DC 15 F DC 16 F
21 1.35 1.41 91.0 -0.50 -0.31 13.6 86 4 3 4 6 1 1 0  DA 7 E DG 8 E DG 9 E DA 10 E DT 11 E DC 4 F 8OG 5
F DG 6 F DA 7 F DC 14 F DC 15 F DC 16 F
22 1.91 2.63 93.2 -0.97 -0.54 9.9 90 7 0 7 4 1 0 0  DG 8 P DG 9 P DA 10 P DT 11 P DC 10 T DC 11 T DT
12 T DT 13 T DC 14 T DC 15 T
23 1.40 1.45 135.0 -0.87 -0.46 12.6 87 6 3 7 5 2 1 0  DA 7 E DG 8 E DG 9 E DA 10 E DT 11 E DC 10 F DC
11 F DT 12 F DT 13 F DC 14 F DC 15 F DC 16 F

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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