spacer
spacer

PDBsum entry 2w4h

Go to PDB code: 
Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 2w4h calculated with MOLE 2.0 PDB id
2w4h
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
9 pores, coloured by radius 9 pores, coloured by radius 9 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.42 2.04 30.1 -2.35 -0.33 32.0 83 3 1 1 2 0 0 0  
2 1.22 1.38 31.2 0.20 0.15 13.5 69 4 0 1 5 2 0 0  
3 2.27 2.57 31.2 -2.76 -0.51 30.8 82 5 1 2 2 0 0 0  
4 1.92 1.95 35.0 -1.21 -0.49 14.2 82 3 2 2 2 1 2 0  
5 1.25 1.77 65.7 0.18 0.12 12.1 84 3 5 3 13 3 0 0  
6 1.91 1.94 66.9 -1.62 -0.46 24.9 81 5 5 0 4 1 2 0  
7 1.27 1.42 71.9 -2.53 -0.51 33.0 83 7 6 2 5 1 0 0  
8 1.24 1.80 107.9 -1.14 -0.22 17.2 79 5 8 4 7 5 0 0  
9 1.30 1.51 47.2 0.18 0.25 13.8 80 3 1 0 6 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer