spacer
spacer

PDBsum entry 2vue

Go to PDB code: 
Top Page protein ligands tunnels links
Tunnel analysis for: 2vue calculated with MOLE 2.0 PDB id
2vue
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
1 tunnel, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.07 2.07 22.4 -0.06 0.51 9.6 71 3 0 0 4 4 1 0  BLA 2001 A
2 2.22 2.22 23.9 -1.91 -0.26 27.0 79 5 2 1 2 2 1 0  BLA 2001 A
3 1.81 1.97 25.2 -1.42 -0.16 24.9 79 5 1 0 2 2 0 0  BLA 2001 A
4 1.52 1.60 16.5 0.88 0.15 6.8 77 2 1 2 5 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer