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PDBsum entry 2vso

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 2vso calculated with MOLE 2.0 PDB id
2vso
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.76 4.01 27.1 -1.75 -0.43 19.7 84 3 2 3 1 2 0 0  AMP 1394 B
2 3.48 3.55 38.0 -2.15 -0.61 19.7 80 3 4 5 1 2 1 0  AMP 1394 B
3 1.64 3.89 42.0 -2.43 -0.70 20.7 86 3 3 5 2 1 0 0  
4 1.67 3.66 68.6 -2.40 -0.64 28.8 84 6 7 6 1 1 1 0  
5 2.85 4.25 73.0 -2.31 -0.69 18.4 79 3 10 8 3 2 2 0  AMP 1394 A
6 1.67 3.60 105.0 -2.20 -0.66 21.7 84 5 9 12 4 3 1 0  AMP 1394 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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