PDBsum entry 2vrf Go to PDB code:  Tunnel analysis for: 2vrf calculated with MOLE 2.0 PDB id 2vrf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.50 1.50 29.3 -1.15 -0.38 22.0 79 3 2 1 4 0 0 0   2 1.49 1.49 31.2 -0.39 -0.06 14.5 84 4 3 2 7 0 0 0   3 2.25 2.47 17.1 -1.64 -0.43 19.6 89 4 0 1 3 0 0 0   4 1.88 3.19 19.3 -1.29 -0.26 19.8 84 4 0 1 3 1 0 0   5 1.33 1.56 17.4 -1.69 -0.36 26.3 76 4 0 1 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.