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PDBsum entry 2vpj
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Protein binding
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PDB id
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2vpj
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Contents |
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* Residue conservation analysis
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PDB id:
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| Name: |
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Protein binding
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Title:
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Crystal structure of the kelch domain of human klhl12
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Structure:
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Kelch-like protein 12. Chain: a. Fragment: kelch domain, residues 268-567. Synonym: cul3-interacting protein 1. Engineered: yes
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Source:
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Homo sapiens. Human. Organism_taxid: 9606. Expressed in: escherichia coli. Expression_system_taxid: 469008. Expression_system_variant: r3-prare2.
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Resolution:
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1.85Å
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R-factor:
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0.164
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R-free:
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0.222
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Authors:
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T.Keates,A.C.W.Pike,A.N.Bullock,E.Salah,P.Filippakopoulos,A.K.Roos, F.Von Delft,P.Savitsky,J.Weigelt,A.Edwards,C.H.Arrowsmith,C.Bountra, S.Knapp
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Key ref:
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P.Canning
et al.
(2013).
Structural basis for Cul3 protein assembly with the BTB-Kelch family of E3 ubiquitin ligases.
J Biol Chem,
288,
7803-7814.
PubMed id:
DOI:
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Date:
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29-Feb-08
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Release date:
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18-Mar-08
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PROCHECK
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Headers
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References
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Q53G59
(KLH12_HUMAN) -
Kelch-like protein 12 from Homo sapiens
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Seq:
Struc:
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568 a.a.
289 a.a.
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Key: |
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PfamA domain |
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Secondary structure |
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CATH domain |
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DOI no:
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J Biol Chem
288:7803-7814
(2013)
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PubMed id:
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Structural basis for Cul3 protein assembly with the BTB-Kelch family of E3 ubiquitin ligases.
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P.Canning,
C.D.Cooper,
T.Krojer,
J.W.Murray,
A.C.Pike,
A.Chaikuad,
T.Keates,
C.Thangaratnarajah,
V.Hojzan,
V.Ayinampudi,
B.D.Marsden,
O.Gileadi,
S.Knapp,
F.von Delft,
A.N.Bullock.
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ABSTRACT
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Cullin-RING ligases are multisubunit E3 ubiquitin ligases that recruit
substrate-specific adaptors to catalyze protein ubiquitylation. Cul3-based
Cullin-RING ligases are uniquely associated with BTB adaptors that incorporate
homodimerization, Cul3 assembly, and substrate recognition into a single
multidomain protein, of which the best known are BTB-BACK-Kelch domain proteins,
including KEAP1. Cul3 assembly requires a BTB protein "3-box" motif,
analogous to the F-box and SOCS box motifs of other Cullin-based E3s. To define
the molecular basis for this assembly and the overall architecture of the E3, we
determined the crystal structures of the BTB-BACK domains of KLHL11 both alone
and in complex with Cul3, along with the Kelch domain structures of KLHL2
(Mayven), KLHL7, KLHL12, and KBTBD5. We show that Cul3 interaction is dependent
on a unique N-terminal extension sequence that packs against the 3-box in a
hydrophobic groove centrally located between the BTB and BACK domains. Deletion
of this N-terminal region results in a 30-fold loss in affinity. The presented
data offer a model for the quaternary assembly of this E3 class that supports
the bivalent capture of Nrf2 and reveals potential new sites for E3 inhibitor
design.
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Links
