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PDBsum entry 2vo0

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2vo0 calculated with MOLE 2.0 PDB id
2vo0
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.24 2.10 35.1 0.59 0.09 10.0 81 3 4 1 7 2 0 0  CL 1351 A M03 1354 A
2 1.35 2.54 35.1 -0.18 -0.13 13.9 83 2 4 2 6 2 0 0  CL 1351 A M03 1354 A
3 1.50 1.77 15.8 1.78 0.65 6.0 66 0 2 0 4 4 0 0  M03 1355 A
4 1.50 1.77 17.3 1.57 0.87 5.5 68 1 1 2 4 5 0 0  M03 1355 A
5 1.51 1.78 17.7 0.94 0.59 7.2 61 1 1 0 3 4 0 0  M03 1355 A
6 1.50 1.77 20.3 1.21 0.57 5.5 68 1 2 1 4 4 0 0  SEP 10 A M03 1355 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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