spacer
spacer

PDBsum entry 2vk7

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2vk7 calculated with MOLE 2.0 PDB id
2vk7
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
15 tunnels, coloured by tunnel radius 16 tunnels, coloured by tunnel radius 16 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.29 23.1 -0.95 -0.17 8.8 80 3 1 5 2 3 0 0  
2 2.00 26.1 -1.23 -0.11 10.5 78 3 1 5 2 3 1 0  
3 1.90 46.7 -0.96 -0.29 7.7 81 3 2 7 5 4 1 0  
4 1.88 49.7 -1.05 -0.27 8.2 80 3 2 7 5 4 2 0  
5 1.90 54.3 -1.38 -0.35 10.7 76 4 4 6 4 5 1 0  
6 1.90 57.3 -1.38 -0.30 11.1 76 4 4 6 4 5 2 0  
7 1.27 22.6 -1.48 -0.23 7.9 81 1 2 4 3 2 1 0  
8 2.16 9.7 0.40 0.54 16.4 69 1 2 0 1 5 0 0  2693 FSI A
9 1.95 11.1 -1.55 -0.19 13.5 57 1 0 1 0 2 1 0  
10 2.09 3.9 -1.13 -0.64 14.9 86 2 1 0 1 0 0 0  
11 1.36 6.5 -1.52 -0.27 10.4 76 1 0 2 2 1 0 0  
12 1.33 7.8 1.65 0.86 1.6 79 0 0 0 3 2 0 0  
13 1.50 6.6 0.43 -0.42 2.3 75 0 1 1 2 0 0 0  
14 1.88 6.6 0.12 -0.28 2.4 82 0 1 2 2 0 0 0  
15 1.51 8.0 -0.13 -0.47 7.2 81 1 1 1 1 0 0 0  
16 1.54 8.3 0.16 -0.20 4.9 71 1 1 1 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer