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PDBsum entry 2vk5

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Tunnel analysis for: 2vk5 calculated with MOLE 2.0 PDB id
2vk5
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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13 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.91 12.0 -0.29 0.39 18.5 70 1 2 1 1 5 0 0  
2 1.64 2.6 0.07 -0.47 2.8 79 0 0 0 0 1 0 0  
3 1.31 5.2 -0.73 -0.81 5.0 90 0 1 1 0 0 0 0  10 CA A
4 2.06 4.0 -1.77 -0.77 21.2 82 2 1 0 0 0 0 0  
5 1.48 8.1 -0.11 -0.39 8.5 74 1 1 1 2 0 0 0  
6 1.60 10.7 -0.41 -0.29 9.5 78 2 1 2 2 0 0 0  
7 2.36 5.9 -1.05 -0.62 14.3 84 1 1 0 0 0 0 0  
8 2.15 6.4 -0.76 -0.46 14.7 90 1 1 0 1 0 0 0  
9 1.33 10.0 -1.68 -0.04 21.0 81 1 1 2 2 2 0 0  
10 2.64 3.4 0.91 0.47 10.3 65 1 0 0 2 1 0 0  
11 1.32 8.6 -0.93 -0.04 13.3 57 1 1 0 1 2 0 1  
12 1.38 4.3 -1.88 -0.71 21.7 87 1 1 1 1 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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