PDBsum entry 2vh6

Tunnel analysis for: 2vh6 calculated with

MOLE 2.0

PDB id

2vh6

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

4 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.27

1.61

15.2

0.01

-0.33

6.0

71

1

1

1

2

1

1

1

2

1.28

1.28

19.7

-0.89

-0.64

13.8

93

1

2

3

1

0

0

0

GSV 1245 A

3

1.24

1.24

20.2

-1.16

-0.83

13.9

80

1

1

1

0

0

0

0

GSV 1245 A

4

1.29

1.29

23.0

-0.68

-0.53

12.0

83

1

2

3

1

1

0

1

GSV 1245 A

5

1.19

1.57

16.2

0.02

0.48

6.1

74

1

1

3

2

2

1

1

6

1.60

1.59

15.1

-0.80

-0.24

14.7

73

1

1

0

2

2

0

1

7

1.28

1.57

19.4

-0.70

-0.25

15.7

73

1

1

0

3

2

0

2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.