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PDBsum entry 2vfm
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Tunnel analysis for: 2vfm calculated with  MOLE 2.0
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PDB id
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2vfm
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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2 tunnels,
coloured by tunnel radius |
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16 tunnels,
coloured by
tunnel radius
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16 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.55 |
2.19 |
17.0 |
-0.52 |
-0.01 |
18.3 |
87 |
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2 |
0 |
1 |
3 |
0 |
0 |
0 |
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2 |
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1.53 |
2.15 |
17.1 |
0.13 |
0.05 |
14.0 |
74 |
2 |
2 |
0 |
3 |
0 |
1 |
0 |
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3 |
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1.28 |
1.28 |
18.0 |
0.86 |
-0.09 |
4.0 |
87 |
0 |
1 |
0 |
5 |
0 |
1 |
0 |
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4 |
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1.54 |
2.15 |
19.5 |
0.13 |
-0.06 |
9.4 |
86 |
2 |
0 |
0 |
4 |
0 |
1 |
0 |
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5 |
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1.28 |
1.28 |
19.7 |
0.36 |
0.04 |
7.8 |
78 |
1 |
1 |
0 |
5 |
1 |
1 |
0 |
GOL 1671 A
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6 |
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1.53 |
2.14 |
21.3 |
-0.18 |
0.14 |
12.6 |
78 |
3 |
0 |
0 |
4 |
1 |
1 |
0 |
GOL 1671 A
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7 |
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1.28 |
1.28 |
21.3 |
0.94 |
0.05 |
8.8 |
78 |
0 |
2 |
0 |
5 |
0 |
1 |
0 |
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8 |
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1.28 |
1.28 |
21.7 |
0.61 |
0.01 |
5.3 |
78 |
1 |
1 |
0 |
5 |
1 |
1 |
0 |
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9 |
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1.52 |
2.10 |
23.3 |
-0.01 |
0.04 |
10.0 |
78 |
3 |
0 |
0 |
4 |
1 |
1 |
0 |
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10 |
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1.28 |
1.28 |
24.3 |
1.09 |
0.05 |
5.6 |
87 |
0 |
1 |
0 |
8 |
0 |
1 |
0 |
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11 |
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1.52 |
2.09 |
25.1 |
0.56 |
0.12 |
10.8 |
85 |
2 |
1 |
0 |
7 |
0 |
1 |
0 |
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12 |
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1.28 |
1.28 |
39.4 |
0.12 |
-0.12 |
9.6 |
85 |
2 |
1 |
2 |
6 |
0 |
1 |
0 |
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13 |
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1.81 |
1.96 |
15.0 |
-0.55 |
0.16 |
14.3 |
77 |
0 |
2 |
1 |
3 |
2 |
0 |
0 |
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14 |
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1.81 |
1.96 |
23.7 |
-1.58 |
-0.11 |
20.3 |
81 |
0 |
3 |
2 |
2 |
2 |
0 |
0 |
GOL 1669 A GOL 1670 A
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15 |
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1.16 |
1.22 |
19.3 |
-0.08 |
-0.30 |
4.8 |
94 |
0 |
2 |
2 |
3 |
0 |
0 |
0 |
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16 |
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1.16 |
1.22 |
22.3 |
-0.92 |
-0.51 |
10.5 |
89 |
1 |
3 |
1 |
3 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program