PDBsum entry 2vdu Go to PDB code:  Tunnel analysis for: 2vdu calculated with MOLE 2.0 PDB id 2vdu Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.02 1.35 27.8 -1.46 -0.46 12.0 85 3 0 3 4 1 1 0   2 1.48 1.60 21.9 -0.88 -0.30 20.2 82 4 3 0 4 1 0 0   3 1.45 1.58 26.4 -0.65 -0.21 19.0 79 4 2 0 4 0 1 0   4 1.25 2.28 29.4 -0.78 -0.13 18.8 83 4 1 1 4 1 1 0   5 1.28 1.28 15.6 1.00 0.17 3.4 60 0 1 0 1 4 1 1   6 1.42 1.42 15.4 0.53 -0.05 4.6 60 0 1 0 1 4 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.