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PDBsum entry 2vdq
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Tunnel analysis for: 2vdq calculated with  MOLE 2.0
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PDB id
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2vdq
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.23 |
1.81 |
28.0 |
-1.03 |
-0.16 |
10.9 |
74 |
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3 |
0 |
3 |
3 |
4 |
0 |
0 |
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2 |
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1.23 |
1.81 |
32.6 |
-1.03 |
-0.03 |
7.1 |
79 |
2 |
1 |
4 |
3 |
4 |
0 |
0 |
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3 |
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1.23 |
1.83 |
39.2 |
-1.29 |
0.00 |
10.2 |
79 |
5 |
1 |
3 |
4 |
5 |
0 |
0 |
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4 |
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1.77 |
1.83 |
17.8 |
-0.36 |
-0.33 |
11.0 |
87 |
1 |
0 |
2 |
2 |
1 |
1 |
0 |
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5 |
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1.72 |
2.45 |
19.3 |
0.50 |
-0.01 |
3.5 |
79 |
1 |
0 |
1 |
3 |
1 |
1 |
0 |
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6 |
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1.49 |
1.73 |
22.7 |
-0.63 |
-0.41 |
5.5 |
86 |
1 |
1 |
3 |
2 |
1 |
1 |
0 |
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7 |
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1.45 |
1.87 |
16.3 |
-1.55 |
-0.62 |
16.9 |
76 |
1 |
1 |
3 |
1 |
1 |
0 |
1 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program