PDBsum entry 2vdl Go to PDB code:  Pore analysis for: 2vdl calculated with MOLE 2.0 PDB id 2vdl Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.15 1.15 27.3 -1.62 -0.53 22.1 80 2 4 1 3 1 2 0   2 2.69 3.09 29.6 -0.17 -0.33 9.1 88 1 2 3 2 1 1 0   3 1.22 1.32 39.6 0.31 0.17 5.1 81 1 3 2 3 1 2 0   4 2.43 2.61 50.6 -1.65 -0.50 12.8 86 2 3 6 1 2 0 0   5 1.13 1.13 122.8 -1.32 -0.42 16.1 80 5 5 6 4 1 2 0   6 1.12 1.12 141.3 -0.74 -0.30 13.7 84 5 3 9 5 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.