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PDBsum entry 2vdl
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Tunnel analysis for: 2vdl calculated with  MOLE 2.0
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PDB id
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2vdl
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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8 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.14 |
1.18 |
26.6 |
-1.05 |
-0.28 |
13.0 |
85 |
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1 |
2 |
2 |
4 |
2 |
2 |
0 |
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2 |
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1.20 |
1.57 |
27.8 |
-1.49 |
-0.48 |
19.2 |
77 |
1 |
3 |
2 |
2 |
3 |
2 |
0 |
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3 |
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1.21 |
1.57 |
28.7 |
-2.05 |
-0.66 |
26.2 |
83 |
3 |
4 |
3 |
1 |
2 |
2 |
0 |
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4 |
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1.22 |
1.56 |
15.3 |
-1.36 |
-0.70 |
7.5 |
106 |
1 |
0 |
4 |
0 |
0 |
0 |
0 |
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5 |
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1.39 |
2.41 |
17.9 |
0.76 |
0.29 |
3.1 |
89 |
1 |
0 |
3 |
7 |
1 |
0 |
0 |
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6 |
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1.22 |
1.97 |
24.3 |
0.98 |
0.32 |
2.3 |
85 |
1 |
0 |
2 |
7 |
1 |
0 |
0 |
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7 |
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1.33 |
1.50 |
15.6 |
-0.62 |
0.33 |
6.0 |
57 |
1 |
0 |
1 |
1 |
4 |
0 |
0 |
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8 |
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1.37 |
1.59 |
16.4 |
1.04 |
0.26 |
4.8 |
79 |
2 |
0 |
3 |
3 |
1 |
0 |
0 |
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9 |
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1.25 |
2.14 |
16.0 |
-0.60 |
0.01 |
22.0 |
67 |
1 |
3 |
0 |
2 |
2 |
2 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program