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PDBsum entry 2vdi

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Protein chain A    -    representing identical chains: B C D E F G H PDB id
2vdi
Protein chain A highlighted
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Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
4 sheets
4 beta alpha beta units
2 beta hairpins
3 beta bulges
16 strands
24 helices
53 helix-helix interacs
27 beta turns
3 gamma turns
2 disulphides
Catalytic residues
D203-H294-H327-K175-K177
Chains 465 a.a.
Chains 140 a.a.
  
Chain & (465 residues)

UniProt code: P00877 (RBL_CHLRE)   [Pfam]

structural classification (2 domains) :
Domain Links CATH no.   Class Architecture
1 3.30.70.150 = Alpha Beta 2-Layer Sandwich
2 3.20.20.110 = Alpha Beta Alpha-Beta Barrel

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
Disulphides:   
    disulphide bond     disulphide bond to other chain
CSA annotation:   
    catalytic residue
Residue contacts:   
    to ligand     to metal
PDB SITE records:   
 AC1  AC2  AC3  AC4  AC5
 AC6  AC7  AC8  AC9  BC1
 BC2  BC3  BC4  BC5  BC6
 BC7  BC8  BC9  CC1  CC2
 CC3  CC4  CC5  CC6  CC7
 CC8  CC9  DC1  DC2  DC3
 DC4  DC5  DC6  DC7  DC8
 DC9  EC1  EC2  EC3  EC4
 EC5  EC6  EC7  EC8  EC9
 FC1  FC2  FC3  FC4  FC5
 FC6  FC7  FC8  FC9  GC1
 GC2  GC3  GC4  GC5

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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