 |
PDBsum entry 2v7q
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2v7q calculated with MOLE 2.0
|
PDB id
|
|
|
|
2v7q
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
30 pores,
coloured by radius |
 |
24 pores,
coloured by radius
|
24 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.51 |
1.60 |
28.3 |
-1.20 |
-0.48 |
17.4 |
80 |
 |
3 |
3 |
1 |
5 |
0 |
1 |
0 |
 |
|
 |
 |
2 |
 |
1.39 |
1.39 |
28.3 |
-1.39 |
-0.51 |
13.7 |
81 |
2 |
1 |
3 |
2 |
2 |
2 |
0 |
ATP 1511 B
|
 |
3 |
 |
1.35 |
1.65 |
40.3 |
-1.70 |
-0.36 |
23.5 |
76 |
5 |
5 |
1 |
4 |
2 |
0 |
0 |
|
 |
4 |
 |
1.16 |
1.14 |
52.2 |
-0.74 |
-0.24 |
17.9 |
83 |
5 |
6 |
1 |
8 |
1 |
2 |
0 |
|
 |
5 |
 |
1.89 |
2.32 |
58.0 |
-1.66 |
-0.33 |
20.2 |
82 |
6 |
6 |
6 |
7 |
1 |
0 |
0 |
|
 |
6 |
 |
1.75 |
1.75 |
58.6 |
-1.88 |
-0.26 |
25.8 |
80 |
6 |
7 |
2 |
3 |
2 |
1 |
0 |
|
 |
7 |
 |
1.72 |
2.77 |
60.1 |
-0.94 |
-0.13 |
17.3 |
77 |
5 |
7 |
2 |
8 |
3 |
1 |
0 |
|
 |
8 |
 |
1.28 |
1.88 |
69.2 |
-0.72 |
-0.34 |
12.4 |
77 |
5 |
5 |
1 |
7 |
3 |
5 |
0 |
|
 |
9 |
 |
1.10 |
1.13 |
71.9 |
0.28 |
0.29 |
13.1 |
81 |
5 |
3 |
3 |
10 |
3 |
0 |
0 |
|
 |
10 |
 |
1.59 |
3.03 |
78.8 |
-0.72 |
-0.33 |
17.3 |
88 |
6 |
3 |
5 |
10 |
0 |
0 |
0 |
|
 |
11 |
 |
1.55 |
1.72 |
78.8 |
-1.86 |
-0.29 |
26.1 |
79 |
8 |
6 |
3 |
3 |
2 |
1 |
0 |
|
 |
12 |
 |
2.57 |
2.71 |
90.7 |
-1.79 |
-0.54 |
23.9 |
85 |
9 |
9 |
7 |
11 |
1 |
1 |
0 |
|
 |
13 |
 |
1.27 |
1.30 |
94.5 |
-0.34 |
-0.24 |
11.7 |
82 |
6 |
7 |
2 |
15 |
1 |
7 |
0 |
|
 |
14 |
 |
1.31 |
1.33 |
94.0 |
-1.01 |
-0.30 |
17.9 |
81 |
6 |
8 |
7 |
7 |
2 |
0 |
0 |
|
 |
15 |
 |
1.64 |
1.86 |
96.7 |
-0.90 |
-0.36 |
15.6 |
87 |
9 |
7 |
5 |
13 |
0 |
3 |
0 |
|
 |
16 |
 |
1.57 |
3.01 |
97.5 |
-0.30 |
-0.10 |
17.9 |
89 |
4 |
5 |
5 |
12 |
1 |
1 |
0 |
|
 |
17 |
 |
1.67 |
1.69 |
101.5 |
-1.09 |
-0.38 |
18.7 |
85 |
11 |
10 |
3 |
12 |
1 |
4 |
0 |
|
 |
18 |
 |
1.45 |
1.47 |
108.2 |
-1.26 |
-0.33 |
16.2 |
86 |
8 |
5 |
9 |
7 |
5 |
3 |
0 |
PO4 1475 E
|
 |
19 |
 |
1.62 |
1.89 |
123.5 |
-1.67 |
-0.39 |
23.7 |
82 |
14 |
11 |
7 |
14 |
3 |
1 |
0 |
|
 |
20 |
 |
1.44 |
1.87 |
125.5 |
-1.33 |
-0.47 |
20.6 |
84 |
10 |
11 |
4 |
14 |
3 |
1 |
0 |
|
 |
21 |
 |
1.33 |
1.70 |
130.3 |
-1.47 |
-0.48 |
23.1 |
82 |
12 |
14 |
2 |
12 |
4 |
2 |
0 |
|
 |
22 |
 |
1.43 |
2.31 |
143.4 |
-0.62 |
-0.20 |
18.5 |
85 |
10 |
12 |
4 |
19 |
6 |
1 |
0 |
ADP 1475 F
|
 |
23 |
 |
1.39 |
1.68 |
148.5 |
-1.04 |
-0.28 |
22.1 |
81 |
12 |
14 |
4 |
14 |
6 |
1 |
0 |
|
 |
24 |
 |
1.22 |
1.44 |
148.1 |
-0.95 |
-0.37 |
19.1 |
86 |
11 |
13 |
5 |
21 |
1 |
3 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |