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PDBsum entry 2v6e

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Top Page protein dna_rna ligands Protein-protein interface(s) pores links
Pore analysis for: 2v6e calculated with MOLE 2.0 PDB id
2v6e
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.05 3.19 27.7 -0.45 -0.09 15.0 72 1 2 2 1 3 0 0  DG 13 C DG 14 C DG 21 C DT 33 D DT 34 D DG 35 D
2 2.31 2.31 36.0 -0.56 -0.23 11.8 71 1 2 1 1 3 0 0  DG 13 C DG 14 C DT 20 C DG 21 C DT 33 D DT 34 D
DG 35 D
3 1.20 2.81 51.4 -2.58 -0.73 30.6 84 6 5 3 1 1 0 0  DA 8 C DC 3 E
4 1.54 1.67 59.1 -0.38 -0.07 10.9 83 2 2 3 6 2 0 0  DG 13 E DG 14 E
5 2.63 2.63 68.0 -1.66 -0.60 18.7 86 5 6 5 3 1 1 0  DA 8 C DC 3 E DG 13 E DG 14 E DA 42 F DT 43 F
6 1.99 2.03 75.8 -1.58 -0.57 14.1 87 3 5 6 4 1 1 0  DG 2 C DC 3 C DG 4 C DG 13 C DG 14 C DA 42 D DT
43 D DC 3 E DG 4 E DC 5 E DG 13 E DG 14 E DA 42 F
DT 43 F
7 2.00 2.00 92.4 -1.03 -0.53 11.2 80 3 4 3 2 2 2 0  DG 23 E DT 24 E DA 31 F DA 32 F DT 33 F DT 34 F
8 1.70 1.70 99.8 -0.78 -0.45 10.1 72 2 2 2 1 3 1 0  DA 18 E DT 19 E DT 20 E DG 21 E DG 23 E DT 24 E D
A 31 F DA 32 F DT 33 F DT 34 F DG 35 F DC 36 F
9 2.11 2.34 103.5 -0.95 -0.01 12.4 73 6 4 3 5 7 3 1  DG 13 C DG 14 C DT 33 D DT 34 D
10 2.63 2.63 110.7 -1.38 -0.61 12.9 85 6 6 8 4 3 1 0  DC 3 C DG 4 C DC 5 C DG 6 C DT 7 C DA 8 C DG 13 C
DG 14 C DA 42 D DT 43 D DC 3 E DG 4 E DC 5 E DG 6
E
11 1.43 2.68 120.0 -1.91 -0.58 20.0 85 7 11 9 6 2 1 0  DG 2 C DC 3 C DG 4 C DG 13 C DG 14 C DA 42 D DT
43 D DC 3 E DG 4 E DC 5 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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