 |
PDBsum entry 2v4i
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2v4i calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2v4i
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
4 tunnels,
coloured by tunnel radius |
|
5 tunnels,
coloured by
tunnel radius
|
5 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.44 |
1.44 |
48.5 |
-1.59 |
-0.58 |
16.4 |
84 |
|
7 |
7 |
2 |
2 |
1 |
2 |
0 |
|
|
 |
|
2 |
 |
1.44 |
1.50 |
58.2 |
-1.61 |
-0.51 |
18.9 |
86 |
7 |
6 |
2 |
3 |
1 |
1 |
0 |
|
|
3 |
 |
1.44 |
1.44 |
60.2 |
-1.97 |
-0.52 |
23.9 |
83 |
9 |
9 |
2 |
2 |
1 |
1 |
1 |
|
|
4 |
 |
1.44 |
1.55 |
75.7 |
-1.37 |
-0.49 |
18.1 |
86 |
8 |
9 |
2 |
5 |
1 |
1 |
0 |
|
 |
5 |
 |
1.53 |
1.71 |
19.2 |
-0.18 |
-0.39 |
6.1 |
98 |
1 |
0 |
2 |
3 |
0 |
0 |
0 |
AYA 181 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program