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PDBsum entry 2v3d

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 2v3d calculated with MOLE 2.0 PDB id
2v3d
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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11 tunnels, coloured by tunnel radius 13 tunnels, coloured by tunnel radius 13 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.25 64.3 -0.81 -0.15 10.2 74 5 1 2 6 5 6 0  1505 SO4 A,1506 SO4 B
2 1.29 88.0 -1.13 -0.27 13.6 77 9 3 4 6 5 6 0  1505 SO4 A,1506 SO4 A,1502 SO4 B,1506 SO4 B
3 1.65 11.2 -2.14 -0.59 18.3 78 1 1 2 0 1 2 0  
4 1.44 17.5 -0.04 -0.28 7.1 87 2 0 2 4 1 0 0  
5 1.44 23.5 -0.69 -0.20 16.3 80 5 1 1 4 2 0 0  1505 SO4 B
6 1.44 31.8 -0.40 0.01 8.0 69 2 3 3 2 6 0 1  1504 NBV B
7 1.48 35.8 -0.39 0.09 10.5 67 3 3 4 3 7 0 1  1504 NBV B
8 1.46 36.7 -0.56 -0.03 10.3 70 2 3 5 3 7 0 1  1504 NBV B
9 1.56 11.8 -1.75 -0.53 15.1 78 1 1 2 0 1 2 0  
10 1.62 19.1 0.63 0.04 1.7 71 0 0 1 7 2 0 0  
11 1.45 16.1 -0.30 -0.35 8.3 87 2 0 2 4 1 0 0  
12 1.44 22.9 -0.65 -0.41 8.4 85 3 0 2 4 1 1 0  
13 1.40 4.0 0.66 -0.24 6.0 84 0 1 0 3 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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