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PDBsum entry 2uzr

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Transferase PDB id
2uzr

 

 

 

 

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Contents
Protein chain
113 a.a. *
Waters ×40
* Residue conservation analysis
PDB id:
2uzr
Name: Transferase
Title: A transforming mutation in the pleckstrin homology domain of akt1 in cancer (akt1-ph_e17k)
Structure: Rac-alpha serine/threonine-protein kinase. Chain: a. Fragment: residues 1-123. Synonym: protein kinase b,pkb,protein kinase b alpha,pkb alpha,proto- oncogenE C-akt,rac-pk-alpha. Engineered: yes. Mutation: yes
Source: Homo sapiens. Human. Organism_taxid: 9606. Gene: akt1, pkb, rac. Expressed in: homo sapiens. Expression_system_taxid: 9606. Expression_system_cell_line: hek293t
Resolution:
1.94Å     R-factor:   0.239     R-free:   0.257
Authors: J.D.Carpten,A.L.Faber,C.Horn,G.P.Donoho,S.L.Briggs,C.M.Robbins, G.Hostetter,S.Boguslawski,T.Y.Moses,S.Savage,M.Uhlik,A.Lin,J.Du, Y.W.Qian,D.J.Zeckner,G.Tucker-Kellogg,J.Touchman,K.Patel,S.Mousses, M.Bittner,R.Schevitz,M.H.Lai,K.L.Blanchard,J.E.Thomas
Key ref:
J.D.Carpten et al. (2007). A transforming mutation in the pleckstrin homology domain of AKT1 in cancer. Nature, 448, 439-444. PubMed id: 17611497 DOI: 10.1038/nature05933
Date:
01-May-07     Release date:   17-Jul-07    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chain
Pfam   ArchSchema ?
P31749  (AKT1_HUMAN) -  RAC-alpha serine/threonine-protein kinase from Homo sapiens
Seq:
Struc:
480 a.a.
113 a.a.*
Key:    PfamA domain  Secondary structure  CATH domain
* PDB and UniProt seqs differ at 1 residue position (black cross)

 Enzyme reactions 
   Enzyme class: E.C.2.7.11.1  - non-specific serine/threonine protein kinase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]
      Reaction:
1. L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H+
2. L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H+
L-seryl-[protein]
+ ATP
= O-phospho-L-seryl-[protein]
+ ADP
+ H(+)
L-threonyl-[protein]
+ ATP
= O-phospho-L-threonyl-[protein]
+ ADP
+ H(+)
Molecule diagrams generated from .mol files obtained from the KEGG ftp site

 

 
    reference    
 
 
DOI no: 10.1038/nature05933 Nature 448:439-444 (2007)
PubMed id: 17611497  
 
 
A transforming mutation in the pleckstrin homology domain of AKT1 in cancer.
J.D.Carpten, A.L.Faber, C.Horn, G.P.Donoho, S.L.Briggs, C.M.Robbins, G.Hostetter, S.Boguslawski, T.Y.Moses, S.Savage, M.Uhlik, A.Lin, J.Du, Y.W.Qian, D.J.Zeckner, G.Tucker-Kellogg, J.Touchman, K.Patel, S.Mousses, M.Bittner, R.Schevitz, M.H.Lai, K.L.Blanchard, J.E.Thomas.
 
  ABSTRACT  
 
Although AKT1 (v-akt murine thymoma viral oncogene homologue 1) kinase is a central member of possibly the most frequently activated proliferation and survival pathway in cancer, mutation of AKT1 has not been widely reported. Here we report the identification of a somatic mutation in human breast, colorectal and ovarian cancers that results in a glutamic acid to lysine substitution at amino acid 17 (E17K) in the lipid-binding pocket of AKT1. Lys 17 alters the electrostatic interactions of the pocket and forms new hydrogen bonds with a phosphoinositide ligand. This mutation activates AKT1 by means of pathological localization to the plasma membrane, stimulates downstream signalling, transforms cells and induces leukaemia in mice. This mechanism indicates a direct role of AKT1 in human cancer, and adds to the known genetic alterations that promote oncogenesis through the phosphatidylinositol-3-OH kinase/AKT pathway. Furthermore, the E17K substitution decreases the sensitivity to an allosteric kinase inhibitor, so this mutation may have important clinical utility for AKT drug development.
 
  Selected figure(s)  
 
Figure 1.
Figure 1: Lys 17 alters the apo and Ins(1,3,4,5)P[4]-complexed AKT1 PHD structure. a, In apo wild-type PHD, an ionic interaction between Glu 17 and Lys 14 (line) fills the binding pocket. b, E17K PHD apo with Lys 17 turned away from Lys 14. c, E17K PHD with Lys 17 involved in new hydrogen bonds (dashed lines) with a water molecule (orange sphere), interposed with the D6-hydroxyl group, and the D5-phosphate of Ins(1,3,4,5)P[4] (orange). Lys 17 also forms a new hydrogen bond with the hydroxyl of Tyr 18. The D1-phosphate forms a hydrogen bond with the amide of Tyr 18, similar to the wild-type PHD. Distances shown are in angstroms.
Figure 5.
Figure 5: Timing and signature of AKT1(E17K)-driven leukaemia. a, Timing of leukaemia onset as determined by the appearance of discernible P-AKT(Ser 473)–GFP cells in blood of rescued lethally irradiated host animals. Myr–AKT1 (n = 12, solid circles), AKT1(E17K) (n = 10, filled triangles), AKT1(WT) (n = 10, open squares) and mock transduction (n = 3, X) is shown. b, Representative flow cytometry results from leukaemic mice (AKT1(E17K) and Myr–AKT1) and non-leukaemic mice (Mock and AKT1(WT)) after staining for P-AKT(Ser 473). c, Stained blood smear from a representative AKT1(E17K) animal showing leukaemic blasts ( 100 magnification).
 
  The above figures are reprinted by permission from Macmillan Publishers Ltd: Nature (2007, 448, 439-444) copyright 2007.  
  Figures were selected by the author.  

Literature references that cite this PDB file's key reference

  PubMed id Reference
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PDB code: 3nsu
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18459149 J.Plati, O.Bucur, and R.Khosravi-Far (2008).
Dysregulation of apoptotic signaling in cancer: molecular mechanisms and therapeutic opportunities.
  J Cell Biochem, 104, 1124-1149.  
18954143 K.E.Landgraf, C.Pilling, and J.J.Falke (2008).
Molecular mechanism of an oncogenic mutation that alters membrane targeting: Glu17Lys modifies the PIP lipid specificity of the AKT1 PH domain.
  Biochemistry, 47, 12260-12269.  
18676830 K.Stemke-Hale, A.M.Gonzalez-Angulo, A.Lluch, R.M.Neve, W.L.Kuo, M.Davies, M.Carey, Z.Hu, Y.Guan, A.Sahin, W.F.Symmans, L.Pusztai, L.K.Nolden, H.Horlings, K.Berns, M.C.Hung, M.J.van de Vijver, V.Valero, J.W.Gray, R.Bernards, G.B.Mills, and B.T.Hennessy (2008).
An integrative genomic and proteomic analysis of PIK3CA, PTEN, and AKT mutations in breast cancer.
  Cancer Res, 68, 6084-6091.  
18385729 L.Chin, and J.W.Gray (2008).
Translating insights from the cancer genome into clinical practice.
  Nature, 452, 553-563.  
18948947 L.Ding, G.Getz, D.A.Wheeler, E.R.Mardis, M.D.McLellan, K.Cibulskis, C.Sougnez, H.Greulich, D.M.Muzny, M.B.Morgan, L.Fulton, R.S.Fulton, Q.Zhang, M.C.Wendl, M.S.Lawrence, D.E.Larson, K.Chen, D.J.Dooling, A.Sabo, A.C.Hawes, H.Shen, S.N.Jhangiani, L.R.Lewis, O.Hall, Y.Zhu, T.Mathew, Y.Ren, J.Yao, S.E.Scherer, K.Clerc, G.A.Metcalf, B.Ng, A.Milosavljevic, M.L.Gonzalez-Garay, J.R.Osborne, R.Meyer, X.Shi, Y.Tang, D.C.Koboldt, L.Lin, R.Abbott, T.L.Miner, C.Pohl, G.Fewell, C.Haipek, H.Schmidt, B.H.Dunford-Shore, A.Kraja, S.D.Crosby, C.S.Sawyer, T.Vickery, S.Sander, J.Robinson, W.Winckler, J.Baldwin, L.R.Chirieac, A.Dutt, T.Fennell, M.Hanna, B.E.Johnson, R.C.Onofrio, R.K.Thomas, G.Tonon, B.A.Weir, X.Zhao, L.Ziaugra, M.C.Zody, T.Giordano, M.B.Orringer, J.A.Roth, M.R.Spitz, I.I.Wistuba, B.Ozenberger, P.J.Good, A.C.Chang, D.G.Beer, M.A.Watson, M.Ladanyi, S.Broderick, A.Yoshizawa, W.D.Travis, W.Pao, M.A.Province, G.M.Weinstock, H.E.Varmus, S.B.Gabriel, E.S.Lander, R.A.Gibbs, M.Meyerson, and R.K.Wilson (2008).
Somatic mutations affect key pathways in lung adenocarcinoma.
  Nature, 455, 1069-1075.  
18337767 L.S.Steelman, S.L.Abrams, J.Whelan, F.E.Bertrand, D.E.Ludwig, J.Bäsecke, M.Libra, F.Stivala, M.Milella, A.Tafuri, P.Lunghi, A.Bonati, A.M.Martelli, and J.A.McCubrey (2008).
Contributions of the Raf/MEK/ERK, PI3K/PTEN/Akt/mTOR and Jak/STAT pathways to leukemia.
  Leukemia, 22, 686-707.  
18813315 M.A.Davies, K.Stemke-Hale, C.Tellez, T.L.Calderone, W.Deng, V.G.Prieto, A.J.Lazar, J.E.Gershenwald, and G.B.Mills (2008).
A novel AKT3 mutation in melanoma tumours and cell lines.
  Br J Cancer, 99, 1265-1268.  
18216767 M.A.Lemmon (2008).
Membrane recognition by phospholipid-binding domains.
  Nat Rev Mol Cell Biol, 9, 99.  
18794882 M.Keniry, and R.Parsons (2008).
The role of PTEN signaling perturbations in cancer and in targeted therapy.
  Oncogene, 27, 5477-5485.  
18728674 M.O.Riener, M.Bawohl, P.A.Clavien, and W.Jochum (2008).
Analysis of oncogenic AKT1 p.E17K mutation in carcinomas of the biliary tract and liver.
  Br J Cancer, 99, 836.  
18216772 M.P.Wymann, and R.Schneiter (2008).
Lipid signalling in disease.
  Nat Rev Mol Cell Biol, 9, 162-176.  
18392055 M.S.Kim, E.G.Jeong, N.J.Yoo, and S.H.Lee (2008).
Mutational analysis of oncogenic AKT E17K mutation in common solid cancers and acute leukaemias.
  Br J Cancer, 98, 1533-1535.  
  19048115 N.Sangha, R.Wu, R.Kuick, S.Powers, D.Mu, D.Fiander, K.Yuen, H.Katabuchi, H.Tashiro, E.R.Fearon, and K.R.Cho (2008).
Neurofibromin 1 (NF1) defects are common in human ovarian serous carcinomas and co-occur with TP53 mutations.
  Neoplasia, 10, 1362.  
18940742 O.Renner, C.Blanco-Aparicio, and A.Carnero (2008).
Genetic modelling of the PTEN/AKT pathway in cancer research.
  Clin Transl Oncol, 10, 618-627.  
18713140 P.C.Dubois, and D.A.van Heel (2008).
Translational mini-review series on the immunogenetics of gut disease: immunogenetics of coeliac disease.
  Clin Exp Immunol, 153, 162-173.  
18725974 Q.B.She, S.Chandarlapaty, Q.Ye, J.Lobo, K.M.Haskell, K.R.Leander, D.DeFeo-Jones, H.E.Huber, and N.Rosen (2008).
Breast tumor cells with PI3K mutation or HER2 amplification are selectively addicted to Akt signaling.
  PLoS ONE, 3, e3065.  
18085538 R.G.Hanshaw, R.V.Stahelin, and B.D.Smith (2008).
Noncovalent keystone interactions controlling biomembrane structure.
  Chemistry, 14, 1690-1697.  
18053070 R.Tibes, S.M.Kornblau, Y.Qiu, S.M.Mousses, C.Robbins, T.Moses, and J.D.Carpten (2008).
PI3K/AKT pathway activation in acute myeloid leukaemias is not associated with AKT1 pleckstrin homology domain mutation.
  Br J Haematol, 140, 344-347.  
18723000 S.Marchi, A.Rimessi, C.Giorgi, C.Baldini, L.Ferroni, R.Rizzuto, and P.Pinton (2008).
Akt kinase reducing endoplasmic reticulum Ca2+ release protects cells from Ca2+-dependent apoptotic stimuli.
  Biochem Biophys Res Commun, 375, 501-505.  
18043260 S.Wee, C.Lengauer, and D.Wiederschain (2008).
Class IA phosphoinositide 3-kinase isoforms and human tumorigenesis: implications for cancer drug discovery and development.
  Curr Opin Oncol, 20, 77-82.  
19107333 T.Furukawa (2008).
Molecular targeting therapy for pancreatic cancer: current knowledge and perspectives from bench to bedside.
  J Gastroenterol, 43, 905-911.  
18621722 T.L.Yuan, H.S.Choi, A.Matsui, C.Benes, E.Lifshits, J.Luo, J.V.Frangioni, and L.C.Cantley (2008).
Class 1A PI3K regulates vessel integrity during development and tumorigenesis.
  Proc Natl Acad Sci U S A, 105, 9739-9744.  
18794884 T.L.Yuan, and L.C.Cantley (2008).
PI3K pathway alterations in cancer: variations on a theme.
  Oncogene, 27, 5497-5510.  
18043258 T.Sjöblom (2008).
Systematic analyses of the cancer genome: lessons learned from sequencing most of the annotated human protein-coding genes.
  Curr Opin Oncol, 20, 66-71.  
18410456 T.Zenz, K.Döhner, T.Denzel, H.Döhner, S.Stilgenbauer, and L.Bullinger (2008).
Chronic lymphocytic leukaemia and acute myeloid leukaemia are not associated with AKT1 pleckstrin homology domain (E17K) mutations.
  Br J Haematol, 141, 742-743.  
18172656 U.Schüller, M.Ruiter, J.Herms, H.A.Kretzschmar, and E.Grasbon-Frodl (2008).
Absence of mutations in the AKT1 oncogene in glioblastomas and medulloblastomas.
  Acta Neuropathol, 115, 367-368.  
18701703 X.Gao, and J.Zhang (2008).
Spatiotemporal analysis of differential Akt regulation in plasma membrane microdomains.
  Mol Biol Cell, 19, 4366-4373.  
18463613 X.Wu, R.Jiang, M.Q.Zhang, and S.Li (2008).
Network-based global inference of human disease genes.
  Mol Syst Biol, 4, 189.  
19132987 Y.Li, Y.Tanaka, M.Tada, R.Hua, M.Seto, Y.Asaoka, M.Ohta, F.Kanai, H.Yoshida, T.Kawabe, T.Sano, T.Motojima, O.Yokosuka, and M.Omata (2008).
Absence of the AKT1 pleckstrin homology domain mutation in Japanese gastrointestinal and liver cancer patients.
  APMIS, 116, 931-933.  
18754328 Z.Cao, J.H.Song, C.J.Kim, Y.G.Cho, S.Y.Kim, S.W.Nam, J.Y.Lee, and W.S.Park (2008).
Absence of E17K mutation in the pleckstrin homology domain of AKT1 in gastrointestinal and liver cancers in the Korean population.
  APMIS, 116, 530-533.  
17936554 B.H.Park, and N.E.Davidson (2007).
PI3 kinase activation and response to Trastuzumab Therapy: what's neu with herceptin resistance?
  Cancer Cell, 12, 297-299.  
17692802 J.Brugge, M.C.Hung, and G.B.Mills (2007).
A new mutational AKTivation in the PI3K pathway.
  Cancer Cell, 12, 104-107.  
  19079757 J.J.Falke (2007).
Membrane Recruitment as a Cancer Mechanism: A Case Study of Akt PH Domain.
  Cellscience, 4, 25-30.  
17936563 K.Berns, H.M.Horlings, B.T.Hennessy, M.Madiredjo, E.M.Hijmans, K.Beelen, S.C.Linn, A.M.Gonzalez-Angulo, K.Stemke-Hale, M.Hauptmann, R.L.Beijersbergen, G.B.Mills, M.J.van de Vijver, and R.Bernards (2007).
A functional genetic approach identifies the PI3K pathway as a major determinant of trastuzumab resistance in breast cancer.
  Cancer Cell, 12, 395-402.  
17972252 L.Li, and A.H.Ross (2007).
Why is PTEN an important tumor suppressor?
  J Cell Biochem, 102, 1368-1374.  
18046441 R.C.Castellino, and D.L.Durden (2007).
Mechanisms of Disease: the PI3K-Akt-PTEN signaling node--an intercept point for the control of angiogenesis in brain tumors.
  Nat Clin Pract Neurol, 3, 682-693.  
The most recent references are shown first. Citation data come partly from CiteXplore and partly from an automated harvesting procedure. Note that this is likely to be only a partial list as not all journals are covered by either method. However, we are continually building up the citation data so more and more references will be included with time. Where a reference describes a PDB structure, the PDB code is shown on the right.

 

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