PDBsum entry 2uyu

Tunnel analysis for: 2uyu calculated with

MOLE 2.0

PDB id

2uyu

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.12

1.48

16.1

-0.72

-0.42

9.3

95

1

1

5

1

1

0

0

2

1.10

1.49

33.3

-1.16

-0.19

12.3

78

2

1

3

2

3

1

0

ZN 1275 A

3

1.29

2.12

15.1

-0.68

-0.50

6.0

95

1

1

4

1

1

0

0

4

1.31

1.55

15.6

-0.69

-0.54

6.7

90

1

1

4

2

1

0

0

5

1.28

2.11

19.5

-0.61

-0.44

6.3

86

1

1

2

1

1

1

0

6

1.36

1.55

20.0

-0.74

-0.46

7.2

80

1

1

2

2

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.