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PDBsum entry 2uvu

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Top Page protein dna_rna ligands metals tunnels links
Tunnel analysis for: 2uvu calculated with MOLE 2.0 PDB id
2uvu
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.90 2.03 23.5 1.96 0.63 5.2 98 1 0 1 5 0 0 0  DT 12 P DA 3 T DC 4 T 8OG 5 T DG 6 T
2 1.89 2.02 25.0 1.28 0.42 9.7 94 2 0 0 6 0 0 0  DC 4 T 8OG 5 T DG 6 T
3 1.90 2.03 26.9 -0.73 0.09 25.0 94 4 0 2 2 0 0 0  DA 6 P DG 9 P DA 10 P DG 6 T DA 7 T DA 8 T DT 9 T
DC 10 T
4 1.21 1.42 32.1 0.08 0.05 14.5 95 3 0 2 5 1 0 0  DA 3 T DC 4 T 8OG 5 T DG 6 T
5 1.91 2.06 36.3 0.54 0.20 10.2 92 2 2 1 4 0 0 0  CA 3002 A DT 12 P DC 13 P DA 14 P DC 4 T 8OG 5 T
DG 6 T
6 1.82 1.99 38.5 -0.75 -0.14 17.0 86 4 2 3 5 1 0 0  DC 4 T 8OG 5 T DG 6 T DA 7 T
7 1.79 1.99 39.1 -1.01 -0.17 20.1 89 5 1 2 5 0 0 0  DC 4 T 8OG 5 T DG 6 T DA 7 T
8 1.26 1.53 20.6 -0.81 -0.25 11.4 79 2 1 1 3 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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