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PDBsum entry 2uvr

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Pore analysis for: 2uvr calculated with MOLE 2.0 PDB id
2uvr
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.77 1.78 33.0 -1.59 -0.36 19.8 86 6 3 3 2 2 0 0  DGT 1000 A CA 3001 A DC 14 P DA 7 T
2 2.24 2.24 40.2 -0.17 -0.16 8.9 92 2 2 1 5 0 0 0  DT 12 P DC 13 P DC 14 P DA 3 T DC 4 T 8OG 5 T DG
6 T
3 2.25 2.25 44.4 -0.08 0.18 19.3 94 5 0 2 6 0 0 0  DG 5 P DA 6 P DA 10 P DC 4 T 8OG 5 T DG 6 T DA 7
T DA 8 T DT 9 T DC 10 T
4 2.55 2.59 48.9 -1.42 -0.33 20.1 91 5 2 3 2 0 0 0  DG 5 P DA 6 P DA 10 P DT 11 P DT 12 P DC 13 P DC
14 P DA 3 T DA 7 T DA 8 T DT 9 T DC 10 T
5 2.45 2.45 59.1 -1.86 -0.63 22.0 81 6 3 2 1 1 1 0  DG 5 P DA 6 P DT 12 P DC 13 P DA 7 T DA 8 T DT 9
T DC 10 T
6 2.16 2.29 81.1 -1.09 -0.72 12.5 80 6 1 0 1 0 0 0  DA 7 P DG 8 P DG 9 P DA 10 P DT 11 P DT 12 P DC
13 P DA 7 T DA 8 T DT 9 T DC 10 T DC 11 T DT 12 T
DT 13 T DC 14 T DC 15 T
7 2.54 2.56 94.9 -0.80 -0.36 16.9 90 6 2 2 3 0 0 0  DG 5 P DA 6 P DA 7 P DG 8 P DG 9 P DA 10 P DT 11
P DT 12 P DC 2 T DA 7 T DA 8 T DT 9 T DC 10 T DT
12 T DT 13 T DC 14 T DC 15 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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