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PDBsum entry 2uvf
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Pore analysis for: 2uvf calculated with MOLE 2.0 PDB id
2uvf
Pores calculated on whole structure Pores calculated excluding ligands
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4 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.86 1.87 28.2 -0.64 -0.26 15.4 85 2 3 2 3 0 0 0  
2 4.75 4.99 28.6 -0.19 -0.21 9.0 89 3 2 4 5 0 0 0  
3 1.28 1.50 32.1 -1.75 -0.54 19.0 87 5 2 3 2 1 0 0  ACT 1627 B
4 3.51 4.21 35.2 -0.34 -0.10 12.6 90 5 3 4 7 1 1 0  SO4 1611 A
5 1.11 2.97 46.3 -1.34 -0.41 19.0 89 5 3 5 4 2 1 0  SO4 1611 A
6 1.20 1.26 48.0 -1.25 -0.56 17.8 86 4 5 3 3 1 0 0  
7 1.29 1.51 57.4 -1.08 -0.37 16.2 89 6 5 8 5 2 1 0  SO4 1611 A NI 1625 B ACT 1627 B
8 2.61 2.60 57.7 -1.37 -0.36 23.9 93 8 5 5 5 0 0 0  SO4 1611 A
9 3.14 5.99 57.6 -0.43 -0.17 13.7 91 7 4 8 6 1 0 0  
10 1.56 2.02 68.1 -0.30 -0.15 11.9 88 5 6 8 9 1 1 0  SO4 1611 A NI 1625 B
11 1.29 1.50 71.6 -1.87 -0.60 23.4 89 8 7 8 4 1 2 0  SO4 1611 A NI 1625 B ACT 1627 B
12 1.22 1.27 74.7 -1.47 -0.48 21.8 90 8 6 7 4 1 2 0  SO4 1611 A
13 1.21 1.28 75.1 -0.70 -0.30 13.9 89 7 5 10 5 2 1 0  
14 1.23 1.34 86.7 -1.85 -0.65 22.0 89 8 8 11 2 2 1 0  SO4 1610 A SO4 1611 A NI 1625 B ACT 1627 B
15 1.68 2.58 25.4 -1.54 -0.21 20.9 82 3 4 5 3 1 1 0  ACT 1628 B
16 1.36 1.78 29.8 -1.35 -0.32 18.8 83 4 3 5 3 1 1 0  ADA 1 C ADA 2 C
17 1.36 1.78 43.8 -1.36 -0.24 19.8 84 4 3 6 4 2 1 0  ADA 1 C ADA 2 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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