PDBsum entry 2rfd

Tunnel analysis for: 2rfd calculated with

MOLE 2.0

PDB id

2rfd

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.46

1.59

29.6

0.11

-0.13

12.8

82

3

2

0

5

1

0

1

2

1.30

1.30

30.9

0.01

-0.20

11.8

80

4

2

0

5

1

0

1

3

1.23

1.23

34.1

0.01

-0.08

13.4

82

4

2

1

8

1

0

1

4

1.45

1.59

34.8

1.08

0.08

6.0

78

3

1

0

8

1

0

1

5

1.21

1.21

35.5

0.78

0.05

9.7

79

2

3

0

9

1

0

1

6

1.30

1.30

36.1

0.80

-0.05

6.0

78

4

1

0

7

1

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.