PDBsum entry 2ra0

Tunnel analysis for: 2ra0 calculated with

MOLE 2.0

PDB id

2ra0

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.18

1.32

18.8

-0.78

-0.75

9.4

85

1

2

3

0

0

0

1

JNJ 1 A

2

1.07

1.07

24.4

-1.40

-0.79

15.6

90

2

2

3

1

0

0

0

3

1.40

1.63

21.6

-1.01

-0.40

18.4

69

2

2

2

2

1

0

2

4

1.23

1.40

21.8

-0.06

-0.17

6.4

78

1

2

2

1

1

0

0

5

1.39

1.62

22.2

-0.79

-0.30

18.1

69

2

2

2

2

1

0

2

6

1.23

1.40

24.5

0.16

-0.16

5.4

77

0

3

2

1

1

0

0

7

1.23

1.41

24.6

0.03

-0.23

5.7

77

0

3

2

1

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.