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PDBsum entry 2r92

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 2r92 calculated with MOLE 2.0 PDB id
2r92
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.57 6.59 81.0 -1.90 -0.52 21.1 85 6 6 7 6 1 1 0  
2 1.16 1.47 102.2 -0.98 -0.30 14.2 81 6 3 4 6 1 2 1  
3 1.17 1.17 131.5 -2.34 -0.54 25.8 81 13 7 5 3 4 1 0  A 15 T
4 1.26 1.39 139.0 -1.01 -0.24 19.2 84 10 13 10 14 4 2 0  
5 2.59 6.60 158.4 -1.89 -0.49 24.7 87 23 13 17 10 2 1 0  
6 1.16 1.15 169.8 -1.38 -0.39 16.4 84 13 7 13 12 5 1 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
7 1.21 1.29 190.5 -1.07 -0.25 17.1 86 13 7 8 15 5 2 0  DG 9 P DA 10 P DC 11 P C 14 T A 15 T
8 1.87 3.07 196.3 -2.11 -0.52 24.6 85 18 15 12 5 3 4 0  
9 1.18 1.25 203.0 -1.60 -0.46 18.1 86 18 10 20 10 4 2 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
10 1.19 1.24 210.2 -1.61 -0.42 18.2 84 16 8 16 14 4 2 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
11 1.19 1.19 232.7 -1.56 -0.40 20.8 85 21 13 15 17 4 2 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
12 1.21 2.34 235.6 -1.93 -0.42 27.4 82 27 20 13 15 6 2 0  DA 8 P DG 9 P DA 10 P DC 11 P DC 12 P C 6 T G 7 T
C 8 T C 9 T U 13 T C 14 T A 15 T
13 1.42 1.42 237.6 -1.47 -0.45 22.1 83 17 10 8 10 5 2 0  A 15 T
14 1.19 1.27 236.8 -1.70 -0.32 25.9 83 23 14 9 9 4 5 0  
15 1.19 1.26 234.9 -1.06 -0.27 18.2 80 19 7 5 11 4 4 3  
16 1.19 1.26 242.0 -2.35 -0.55 26.6 84 18 10 9 8 4 2 0  A 15 T
17 1.17 1.09 261.4 -1.83 -0.38 25.0 82 23 13 11 9 3 3 3  
18 1.19 1.13 271.8 -1.87 -0.47 26.4 80 22 13 8 7 3 2 3  
19 1.18 1.30 285.3 -1.62 -0.40 20.3 84 24 10 12 11 3 2 3  DG 9 P DA 10 P DC 11 P C 14 T A 15 T
20 1.19 1.33 280.4 -1.75 -0.40 24.5 82 22 18 15 18 3 4 2  
21 1.18 1.16 307.7 -0.89 -0.31 17.7 85 17 10 10 22 6 3 0  DG 9 P DA 10 P DC 11 P C 14 T A 15 T
22 1.37 1.64 307.9 -1.14 -0.39 19.6 85 24 15 16 22 5 2 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
23 1.65 3.42 305.4 -1.82 -0.47 23.3 83 23 15 16 16 7 3 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
24 1.35 1.56 327.4 -1.19 -0.40 18.1 85 20 11 19 21 5 3 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
25 1.77 3.16 322.0 -1.91 -0.48 25.7 84 29 20 16 18 6 3 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
26 1.87 3.27 338.6 -1.88 -0.50 23.2 85 28 18 23 14 6 4 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
27 1.18 1.03 347.8 -1.71 -0.49 23.1 83 34 19 19 16 3 3 3  DA 10 P DC 11 P DC 12 P C 6 T G 7 T
28 1.78 3.21 345.8 -1.88 -0.48 23.6 83 26 16 19 18 6 4 0  DG 9 P DA 10 P DC 11 P DC 12 P C 6 T C 14 T A 15 T
29 1.35 1.55 352.5 -1.65 -0.48 23.3 85 23 13 12 15 5 3 0  A 15 T
30 1.29 1.42 353.7 -1.33 -0.44 21.2 84 24 13 13 18 3 2 2  DG 9 P DA 10 P DC 11 P C 14 T A 15 T

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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