PDBsum entry 2r8k

Pore analysis for: 2r8k calculated with

MOLE 2.0

PDB id

2r8k

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.69

2.96

28.9

-0.63

-0.30

13.5

86

1

3

1

2

1

0

0

DT 9 Q DG 10 Q

2

1.44

2.29

33.1

-1.55

-0.43

21.5

81

3

2

2

2

2

0

0

DG 12 P DC 13 P DT 7 T DC 8 T DA 9 T DC 10 T DC
10 U

3

2.05

2.05

33.9

-0.51

-0.10

15.3

89

2

5

3

6

1

1

0

DC 10 U

4

2.05

2.05

35.7

-0.61

-0.18

14.3

90

2

5

4

6

0

1

0

DC 10 U

5

1.55

1.94

56.8

-1.70

-0.48

21.9

73

5

3

2

2

3

1

0

DG 12 P DC 13 P DT 7 T DC 8 T DA 9 T DC 10 T DC
11 T DA 12 T

6

1.51

2.41

58.7

-1.49

-0.28

15.1

82

2

4

6

4

4

1

0

7

1.27

1.39

60.5

-1.43

-0.27

13.7

74

3

4

4

1

5

1

0

8

2.28

2.28

65.8

-1.76

-0.44

18.2

87

6

0

2

1

1

0

0

DT 6 Q DG 7 Q DG 8 Q DT 9 Q DG 4 U DG 5 U DC 10 U
DC 11 U

9

1.14

1.81

71.1

-1.67

-0.50

18.3

85

4

4

7

6

2

1

0

DG 12 Q DC 13 Q DC 8 U DA 9 U DC 10 U

10

1.21

2.08

76.4

-1.30

-0.34

18.5

84

5

7

7

7

3

0

0

CA 1001 A DTP 2001 A DG 12 Q DC 13 Q

11

1.97

1.98

85.9

-0.57

-0.26

12.8

83

4

7

7

9

3

3

0

DC 10 T DC 11 T DA 12 T

12

2.45

2.47

138.0

-0.80

-0.47

9.6

82

6

2

6

5

3

4

0

DT 6 Q DG 7 Q DG 8 Q DT 9 Q DC 10 T DC 11 T DA 12
T DG 4 U DG 5 U DC 10 U DC 11 U

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.