 |
PDBsum entry 2r7z
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2r7z calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2r7z
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
17 pores,
coloured by radius |
|
20 pores,
coloured by radius
|
20 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.68 |
2.68 |
48.6 |
-2.27 |
-0.67 |
27.4 |
77 |
|
5 |
3 |
0 |
1 |
0 |
2 |
0 |
|
U 1 P G 4 P A 5 P G 6 P G 7 P DG 17 T DC 18 T DT
24 T DC 25 T CPT 67 T
|
 |
|
2 |
 |
1.22 |
2.09 |
53.3 |
-0.95 |
0.05 |
20.1 |
71 |
6 |
3 |
1 |
3 |
3 |
1 |
0 |
|
|
3 |
 |
3.26 |
5.02 |
57.3 |
-2.38 |
-0.49 |
28.0 |
83 |
7 |
6 |
4 |
2 |
1 |
1 |
0 |
|
|
4 |
 |
1.90 |
2.99 |
62.6 |
-1.38 |
-0.35 |
21.5 |
80 |
5 |
3 |
1 |
7 |
0 |
3 |
0 |
G 6 P DG 17 T
|
|
5 |
 |
2.10 |
2.22 |
98.7 |
-1.44 |
-0.40 |
17.0 |
81 |
6 |
8 |
7 |
6 |
4 |
1 |
0 |
G 6 P G 10 P DG 17 T DC 18 T DC 19 T
|
|
6 |
 |
1.66 |
1.84 |
100.6 |
-1.54 |
-0.38 |
19.8 |
85 |
5 |
5 |
5 |
11 |
1 |
3 |
0 |
|
|
7 |
 |
1.21 |
2.25 |
125.3 |
-1.45 |
-0.22 |
19.2 |
78 |
9 |
7 |
5 |
11 |
4 |
4 |
0 |
|
|
8 |
 |
3.11 |
3.50 |
128.8 |
-1.82 |
-0.47 |
22.2 |
82 |
13 |
7 |
5 |
10 |
1 |
4 |
0 |
DC 1 N DA 2 N G 6 P
|
|
9 |
 |
3.11 |
3.31 |
129.5 |
-2.29 |
-0.59 |
23.6 |
84 |
16 |
7 |
11 |
6 |
0 |
4 |
0 |
DC 1 N DA 2 N G 6 P
|
|
10 |
 |
1.26 |
1.41 |
160.4 |
-1.59 |
-0.37 |
22.6 |
83 |
15 |
13 |
9 |
16 |
1 |
3 |
0 |
|
|
11 |
 |
1.19 |
1.17 |
166.5 |
-0.49 |
-0.06 |
22.2 |
81 |
13 |
16 |
5 |
24 |
2 |
1 |
0 |
|
|
12 |
|
1.28 |
2.16 |
175.5 |
-1.50 |
-0.31 |
21.5 |
76 |
22 |
10 |
5 |
9 |
5 |
4 |
0 |
DC 1 N DA 2 N G 6 P
|
|
13 |
|
1.18 |
2.54 |
173.7 |
-0.63 |
-0.09 |
20.3 |
81 |
12 |
13 |
7 |
21 |
4 |
1 |
0 |
|
|
14 |
|
1.20 |
1.93 |
180.6 |
-1.09 |
-0.14 |
20.4 |
76 |
16 |
15 |
7 |
11 |
8 |
3 |
0 |
|
|
15 |
|
1.36 |
1.93 |
183.1 |
-1.31 |
-0.24 |
23.2 |
82 |
14 |
12 |
11 |
15 |
4 |
2 |
0 |
|
|
16 |
|
1.68 |
2.93 |
188.7 |
-1.67 |
-0.43 |
20.6 |
83 |
21 |
12 |
19 |
12 |
3 |
6 |
0 |
|
|
17 |
|
1.21 |
1.27 |
241.2 |
-1.91 |
-0.54 |
23.7 |
83 |
17 |
17 |
13 |
13 |
3 |
2 |
0 |
|
|
18 |
|
1.18 |
2.28 |
247.8 |
-1.81 |
-0.38 |
22.9 |
80 |
22 |
20 |
13 |
7 |
7 |
4 |
0 |
U 1 P G 4 P A 5 P G 6 P G 7 P A 8 P G 10 P DC 18
T DC 19 T DC 20 T DT 24 T DC 25 T
|
|
19 |
|
1.19 |
1.37 |
287.1 |
-1.17 |
-0.33 |
20.1 |
82 |
26 |
13 |
20 |
21 |
3 |
5 |
2 |
DA 3 N DG 4 N DT 5 N DT 11 T
|
 |
20 |
|
1.24 |
1.41 |
298.1 |
-1.72 |
-0.30 |
25.1 |
80 |
29 |
10 |
12 |
17 |
3 |
4 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program