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PDBsum entry 2r7z

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Top Page protein dna_rna ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2r7z calculated with MOLE 2.0 PDB id
2r7z
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 1.41 42.5 -0.27 -0.35 6.4 83 4 0 5 7 2 1 0  
2 1.31 1.41 49.4 -0.36 -0.33 7.4 84 4 2 6 4 3 2 0  
3 1.31 1.41 69.9 -0.41 -0.28 7.0 83 4 2 4 5 3 1 0  G 6 P G 10 P DG 17 T DC 18 T DC 19 T
4 1.20 2.40 89.1 0.21 0.13 12.7 84 9 5 5 13 3 1 0  
5 1.18 1.38 57.2 -0.58 -0.18 13.8 80 5 4 3 8 4 0 0  
6 1.20 1.41 70.5 -0.78 -0.21 13.3 82 6 4 6 8 4 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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