PDBsum entry 2r4b

Tunnel analysis for: 2r4b calculated with

MOLE 2.0

PDB id

2r4b

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

8 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.25

2.40

17.9

-0.74

-0.11

9.3

81

1

2

2

2

2

1

0

2

1.37

1.78

15.2

-1.67

-0.38

22.7

87

2

2

1

1

0

0

0

3

1.62

1.65

18.1

-2.48

-0.45

30.9

77

4

2

1

1

1

1

0

4

1.65

2.04

19.7

-1.28

-0.61

18.6

86

1

3

2

2

1

0

0

5

1.76

1.76

24.4

-1.53

-0.75

19.2

89

2

1

2

1

0

0

0

6

1.72

1.90

27.4

-1.35

-0.71

16.2

90

2

2

2

2

0

0

0

7

1.23

2.26

18.1

-0.74

-0.16

10.1

81

1

2

2

2

2

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.