PDBsum entry 2r09

Tunnel analysis for: 2r09 calculated with

MOLE 2.0

PDB id

2r09

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

11 tunnels, coloured by tunnel radius

11 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.83

1.89

23.5

-1.34

-0.50

12.6

84

3

1

2

2

2

0

0

MSE 199 A MSE 221 A PE5 407 A

2

1.81

1.87

24.2

-1.38

-0.49

11.7

89

2

1

3

1

2

0

0

MSE 199 A MSE 221 A SO4 402 A PE5 407 A

3

1.82

1.90

27.1

-1.53

-0.44

17.1

81

3

2

2

1

2

1

0

MSE 199 A MSE 221 A SO4 401 A

4

1.83

1.89

27.6

-0.21

-0.11

7.0

80

1

1

3

1

2

1

0

MSE 199 A PGE 406 A PE5 407 A

5

1.78

1.85

31.9

-1.80

-0.53

18.6

78

3

4

2

0

2

1

0

MSE 199 A MSE 221 A SO4 401 A

6

1.47

2.42

39.4

-1.31

-0.24

12.4

82

2

3

4

0

2

1

0

MSE 199 A PE5 407 A

7

1.26

1.93

18.9

-1.72

-0.12

22.2

82

5

1

0

4

2

0

0

4IP 405 A

8

1.52

3.19

18.3

-2.44

-0.18

31.0

81

6

1

0

3

2

0

0

4IP 400 B

9

1.37

1.37

20.3

-2.18

-0.08

28.5

82

6

1

0

4

2

0

0

4IP 400 B

10

1.18

3.72

33.7

1.47

0.46

5.7

69

2

0

0

6

4

0

0

MSE 168 A MSE 169 A

11

1.47

1.47

15.9

-1.69

-0.05

15.4

82

1

1

1

0

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.