PDBsum entry 2qyi

Tunnel analysis for: 2qyi calculated with

MOLE 2.0

PDB id

2qyi

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.29

1.29

22.8

-0.80

-0.36

12.0

79

2

1

3

2

1

3

0

2

1.29

1.29

24.7

-0.29

-0.34

8.3

79

1

1

3

2

1

2

1

3

1.29

1.29

32.8

-1.30

-0.34

10.7

88

3

1

8

2

1

1

0

4

1.29

1.30

37.8

-1.15

-0.29

10.6

85

2

1

6

2

1

3

0

5

1.39

1.48

15.0

-0.72

-0.34

13.5

98

2

0

2

2

0

0

0

6

1.10

1.38

23.9

0.26

-0.39

5.9

77

0

1

1

5

0

0

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.