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Ligand clusters for UniProt code P03472

Ligand clusters for P03472: Neuraminidase OS=Influenza A virus (strain A/Tern/Australia/G70C/1975 H11N9) GN=NA PE=1 SV=1

Top 6 (of 15) ligand clusters
Cluster 1.
19 ligand types
28 ligands
Cluster 2.
5 ligand types
38 ligands
Cluster 3.
4 ligand types
39 ligands
Cluster 4.
3 ligand types
40 ligands
Cluster 5.
2 ligand types
5 ligands
Cluster 6.
2 ligand types
3 ligands
Representative protein: 1ncaN  
 

Structures

PDB   Schematic diagram
1ncaN    
1inyA    
3nn9A    
1nmcN    
4nn9A    
 more ...

 

 Cluster 1 contains 19 ligand types

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Ligand Description


 
1. Ligand: SIA × 2
O-Sialic acid
PDB codes: 2c4a(A), 2c4l(A).


 
2. Ligand: ZMR × 1
zanamivir
Zanamivir
PDB code: 1nnc(A).


 
3. Ligand: DAN × 1
2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB code: 1nnb(A).


 
4. Ligand: ABW × 1
5-[1-(Acetylamino)-3-Methylbutyl]-2,5-Anhydro-3,4- Dideoxy-4-(Methoxycarbonyl)pentonic acid
PDB code: 1xog(A).


 
5. Ligand: BCZ × 3
3-(1-Acetylamino-2-Ethyl-Butyl)-4-Guanidino-2-Hydroxy- Cyclopentanecarboxylic acid
PDB codes: 1l7f(A), 1l7g(A), 1l7h(A).


 
6. Ligand: ABX × 1
5-[1-(Acetylamino)-3-Methylbutyl]-4-(Methoxycarbonyl) proline
PDB code: 1xoe(A).


 
7. Ligand: SIA × 2
O-Sialic acid
PDB codes: 1mwe(A), 2qwb(A).


 
8. Ligand: DAN × 2
2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB codes: 1f8b(A), 2qwc(A).


 
9. Ligand: 4AM × 2
4-Amino-2-Deoxy-2,3-Dehydro-N-Neuraminic acid
PDB codes: 1f8c(A), 2qwd(A).


 
10. Ligand: G20 × 2
4-Acetyl-4-Guanidino-6-Methyl(propyl)carboxamide-4,5- Dihydro-2h-Pyran-2-Carboxylic acid
PDB codes: 2qwf(A), 2qwi(A).


 
11. Ligand: G28 × 2
5-N-Acetyl-4-Amino-6-Diethylcarboxamide-4,5-Dihydro-2h- Pyran-2-Carboxylic acid
PDB codes: 2qwg(A), 2qwj(A).


 
12. Ligand: G39 × 2
(3r,4r,5s)-4-(Acetylamino)-5-Amino-3-(Pentan-3-Yloxy) cyclohex-1-Ene-1-Carboxylic acid
PDB codes: 2qwh(A), 2qwk(A).


 
13. Ligand: 3LV × 1
4-[2,2-Bis(hydroxymethyl)-5-Oxopyrrolidin-1-Yl]-3- [(Dipropylamino)methyl]benzoic acid
PDB code: 4dgr(A).


 
14. Ligand: 49A × 1
4,9-Amino-2,4-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB code: 1f8e(A).


 
15. Ligand: 9AM × 1
9-Amino-2-Deoxy-2,3-Dehydro-N-Acetyl-Neuraminic acid
PDB code: 1f8d(A).


 
16. Ligand: DPC × 1
5-Acetylamino-4-Amino-6-(Phenethyl-Propyl-Carbamoyl)-5, 6-Dihydro-4h-Pyran-2-Carboxylic acid
PDB code: 1bji(A).


 
17. Ligand: EQP × 1
(4-Acetamido-2,4-Dideoxy-D-Glycero-Alpha-D-Galacto-1- Octopyranosyl)phosphonic acid
PDB code: 1iny(A).


 
18. Ligand: GNA × 1
2,4-Deoxy-4-Guanidino-5-N-Acetyl-Neuraminic acid
PDB code: 2qwe(A).


 
19. Ligand: ZGE × 1
(2r,3r,4r)-3-Acetamido-4-Carbamimidamido-5-Fluoranyl-2- [(1r,2r)-1,2,3-Tris(oxidanyl)propyl]-3,4-
Dihydro-2h- Pyran-6-Carboxylic acid
PDB code: 3w09(A).

 

 Cluster 2 contains 5 ligand types

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Ligand Description


 
1. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN × 15
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 1iny(A), 1l7f(A), 1l7g(A), 1l7h(A), 2qwa(A), 2qwb(A), 2qwc(A), 2qwd(A), 2qwe(A), 2qwf(A), 2qwg(A), 2qwh(A), 2qwj(A), 2qwk(A), 3nn9(A).


 
2. Ligand: NAG-NAG-BMA-MAN-MAN-MAN × 10
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 1a14(N), 1bji(A), 1nca(N), 1ncb(N), 1ncc(N), 1nmc(N), 1nnc(A), 1xoe(A), 1xog(A), 2qwi(A).


 
3. Ligand: NAG-NAG-MAN-MAN-MAN-MAN-MAN × 8
NAG=N-Acetyl-D-Glucosamine, MAN=Alpha-D-Mannose.
PDB codes: 1f8b(A), 1f8c(A), 1f8d(A), 1f8e(A), 4nn9(A), 5nn9(A), 6nn9(A), 7nn9(A).


 
4. Ligand: NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN × 3
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose, MAN=Alpha-D-Mannose.
PDB codes: 1mwe(A), 3w09(A), 4dgr(A).


 
5. Ligand: NAG-NAG × 2
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 2c4a(A), 2c4l(A).

 

 Cluster 3 contains 4 ligand types

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Ligand Description


 
1. Ligand: NAG × 36
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1a14(N), 1bji(A), 1f8b(A), 1f8c(A), 1f8d(A), 1f8e(A), 1iny(A), 1l7f(A), 1l7g(A), 1l7h(A), 1mwe(A), 1nca(N), 1ncc(N), 1nmc(N), 1nnc(A), 1xoe(A), 1xog(A), 2c4a(A), 2c4l(A), 2qwa(A), 2qwb(A), 2qwc(A), 2qwd(A), 2qwe(A), 2qwf(A), 2qwg(A), 2qwh(A), 2qwi(A), 2qwj(A), 2qwk(A), 3nn9(A), 3w09(A), 4nn9(A), 5nn9(A), 6nn9(A), 7nn9(A).


 
2. Ligand: BGC × 1
Beta-D-Glucose
PDB code: 4dgr(A).


 
3. Ligand: NAG-NAG × 1
NAG=N-Acetyl-D-Glucosamine.
PDB code: 1ncb(N).


 
4. Ligand: NAG-NAG-BMA × 1
NAG=N-Acetyl-D-Glucosamine, BMA=Beta-D-Mannose.
PDB code: 4dgr(A).

 

 Cluster 4 contains 3 ligand types

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Ligand Description


 
1. Ligand: NAG × 19
n-acetyl-d-glucosamine
N-Acetyl-D-Glucosamine
PDB codes: 1bji(A), 1f8e(A), 1iny(A), 1mwe(A), 1nca(N), 1ncb(N), 1ncc(N), 1nmc(N), 1nnc(A), 1xoe(A), 1xog(A), 2qwi(A), 3nn9(A), 4nn9(A), 5nn9(A), 6nn9(A), 7nn9(A).


 
2. Ligand: NAG-NAG × 20
NAG=N-Acetyl-D-Glucosamine.
PDB codes: 1f8b(A), 1f8c(A), 1f8d(A), 1l7f(A), 1l7g(A), 1l7h(A), 2c4a(A), 2c4l(A), 2qwa(A), 2qwb(A), 2qwc(A), 2qwd(A), 2qwe(A), 2qwf(A), 2qwg(A), 2qwh(A), 2qwj(A), 2qwk(A), 3w09(A), 4dgr(A).


 
3. Ligand: NDG × 1
2-(Acetylamino)-2-Deoxy-A-D-Glucopyranose
PDB code: 1a14(N).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: SIA × 4
O-Sialic acid
PDB codes: 2c4a(A), 2c4l(A), 1mwe(A), 2qwb(A).


 
2. Ligand: GOL × 1
Glycerol
PDB code: 3w09(A).

 

 Cluster 6 contains 2 ligand types

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Ligand Description


 
1. Ligand: GOL × 2
Glycerol
PDB codes: 1l7f(A), 3w09(A).


 
2. Ligand: GLC × 1
Alpha-D-Glucose
PDB code: 4dgr(A).

 

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